G176817


Basic Information

Item Value
gene id G176817
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 6082828 ~ 6167802 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU209305
ACATTTGGGATATGCCACCAGCATGACATCATCCTCCCTGGCCTCCAGGTCCTTTAATGCATCTAGGTTCTCCGGTGGGCTCATGATTGTGGAGTAGAGGATCCCATTTCTCTTGTAAAGCTTCTCCTCATCTTTCATATTCATGCCCCGCTCCATGTTGGACTTTATGTTTGCTGCAAAAGTTGGAGCAGACATCTTGTCCCTGCTGCTTCAGGCACGGGGTCTCTTCTACTGCTGGCTGAAGAGTGGTGTGAGAGGACTGTGCGTGCGTGCTTGCTtgcgtgcgtgcatgcatgcgtgtgtgtgagtgtgtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU209305 True 315 lncRNA 0.51 2 6082828 6167802

Neighbor

gene id symbol gene type direction distance location
eml6 eml6,LOC107597181 coding downstream 84691 5949048 ~ 5998137 (-)
LOC113536410 pcdh20 coding downstream 153699 5924209 ~ 5929129 (-)
rbbp9 rbbp9 coding downstream 224502 5854377 ~ 5858326 (-)
srsf11 srsf11,LOC103035453 coding downstream 238985 5830751 ~ 5843843 (-)
plaat1 LOC108270879,LOC108435900,LOC107713876,LOC104947671 coding downstream 296284 5781225 ~ 5786544 (-)
LOC113536569 LOC108271057,LOC108442067,LOC107741992,LOC107680499,LOC107657964 coding upstream 59292 6227094 ~ 6296876 (-)
galnt18b galnt18,galnt18b,LOC107584699,LOC107686803,LOC106587200 coding upstream 190335 6358137 ~ 6461826 (-)
ctr9 ctr9 coding upstream 387917 6555719 ~ 6567757 (-)
ampd3a ampd3,ampd3a,LOC108433033 coding upstream 454102 6621904 ~ 6643123 (-)
adma adm coding upstream 480946 6648748 ~ 6651135 (-)
G176556 NA non-coding downstream 367808 5631826 ~ 5715020 (-)
G176354 NA non-coding downstream 675729 5304614 ~ 5407099 (-)
G176336 NA non-coding downstream 969560 5110114 ~ 5113268 (-)
G176029 NA non-coding downstream 1235687 4840748 ~ 4847141 (-)
G176028 NA non-coding downstream 1242135 4839988 ~ 4840693 (-)
G176816 LOC108271104 non-coding upstream 4396 6172198 ~ 6176354 (-)
G176832 NA non-coding upstream 16533 6184335 ~ 6188288 (-)
G176855 NA non-coding upstream 92995 6260797 ~ 6261240 (-)
G176938 NA non-coding upstream 189772 6357574 ~ 6358087 (-)
G176959 NA non-coding upstream 290564 6458366 ~ 6459631 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other downstream 374524 5696380 ~ 5708304 (-)
trip4 trip4 other downstream 886010 5139610 ~ 5196818 (-)
G176307 NA other downstream 1001933 5079817 ~ 5080895 (-)
lto1 oraov1 other downstream 1578499 4498946 ~ 4504329 (-)
bola3 bola3,LOC107686851,LOC107727091 other downstream 2086375 3992726 ~ 3996453 (-)
LOC113536608 LOC108270551 other upstream 688953 6856755 ~ 6861348 (-)
si:dkey-56d12.4 LOC108270721 other upstream 1312620 7480422 ~ 7484117 (-)
si:ch1073-365p7.2 NA other upstream 1412632 7580434 ~ 7588815 (-)
igf1rb LOC108271091 other upstream 1508114 7675916 ~ 7764430 (-)
trnar-ucg_7 NA other upstream 2076847 8244649 ~ 8244721 (-)

Expression


Co-expression Network