G176938


Basic Information

Item Value
gene id G176938
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 6357574 ~ 6358087 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU209451
CAAAATTTGATTATTATTggaaaaagtcaaataaaaaatttattcagATTCTCAATCTGATGtggaaataatttaataagctagcaaggtgattttcCCCATAACTCTGATACTTATATTCCTTCTGTACGCCCTCATTCACAGTTTAACAGTtccccagattctgaacaaagctgGTCACATATCGATCAGAGGATACtaaatcgtatcgtatcgtcacagattcagtggtatggtacagttgaggtcaaaagtttacaccccctttcagaatccccccggctcttaatgcatggtttttccttctggagcatcagtgagcgtttgaaccttctgtaatagttgcatacgagtccctcagttgtcctcagtgtgaaaagatggatctcaaaatcatacagtcattgttggaaagggttcaaatacacaaaaaaatgctggaaaaccaaagaatttgtgggacctgaaggatttttctgaagaacagcaggcagtttaactgttcaggacaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU209451 True 514 lncRNA 0.38 1 6357574 6358087

Neighbor

gene id symbol gene type direction distance location
LOC113536569 LOC108271057,LOC108442067,LOC107741992,LOC107680499,LOC107657964 coding downstream 60698 6227094 ~ 6296876 (-)
LOC113536415 acyp2,LOC105896825 coding downstream 248202 6100029 ~ 6109372 (-)
LOC113536414 c10h2orf73 coding downstream 262796 6085672 ~ 6094778 (-)
sptbn1 sptbn1,LOC108270927,LOC108442064 coding downstream 272767 6001691 ~ 6084807 (-)
eml6 eml6,LOC107597181 coding downstream 359437 5949048 ~ 5998137 (-)
galnt18b galnt18,galnt18b,LOC107584699,LOC107686803,LOC106587200 coding upstream 50 6358137 ~ 6461826 (-)
ctr9 ctr9 coding upstream 197632 6555719 ~ 6567757 (-)
ampd3a ampd3,ampd3a,LOC108433033 coding upstream 263817 6621904 ~ 6643123 (-)
adma adm coding upstream 290661 6648748 ~ 6651135 (-)
swap70a LOC108271193 coding upstream 436452 6794539 ~ 6807030 (-)
G176855 NA non-coding downstream 96334 6260797 ~ 6261240 (-)
G176832 NA non-coding downstream 169286 6184335 ~ 6188288 (-)
G176816 LOC108271104 non-coding downstream 181220 6172198 ~ 6176354 (-)
G176817 NA non-coding downstream 189772 6082828 ~ 6167802 (-)
G176556 NA non-coding downstream 642554 5631826 ~ 5715020 (-)
G176959 NA non-coding upstream 100279 6458366 ~ 6459631 (-)
G176990 NA non-coding upstream 185912 6543999 ~ 6545070 (-)
G176992 eif4g2,LOC108433007 non-coding upstream 192827 6550914 ~ 6551262 (-)
G176991 eif4g2,LOC108433007,LOC101472382,LOC103379577,LOC100694876,LOC102291832,LOC102792130 non-coding upstream 193238 6551325 ~ 6551582 (-)
LOC117598400 NA non-coding upstream 220917 6579004 ~ 6589296 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other downstream 649270 5696380 ~ 5708304 (-)
trip4 trip4 other downstream 1160756 5139610 ~ 5196818 (-)
G176307 NA other downstream 1276679 5079817 ~ 5080895 (-)
lto1 oraov1 other downstream 1853245 4498946 ~ 4504329 (-)
bola3 bola3,LOC107686851,LOC107727091 other downstream 2361121 3992726 ~ 3996453 (-)
LOC113536608 LOC108270551 other upstream 498668 6856755 ~ 6861348 (-)
si:dkey-56d12.4 LOC108270721 other upstream 1122335 7480422 ~ 7484117 (-)
si:ch1073-365p7.2 NA other upstream 1222347 7580434 ~ 7588815 (-)
igf1rb LOC108271091 other upstream 1317829 7675916 ~ 7764430 (-)
trnar-ucg_7 NA other upstream 1886562 8244649 ~ 8244721 (-)

Expression


Co-expression Network