G176990


Basic Information

Item Value
gene id G176990
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 6543999 ~ 6545070 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU209512
TGTTTATAGTgaatgtttttcagttttttcaaacatttcacaGCCTCAGATTGTCAGAGATCTGACTctatagaaagaaaaatatttctttctgaaaaatatttgaCCAGATATGATAAGGACACgagtttaatgttgtgtttatcTGATCTCCATTCAACGCAAGGCCTCCCAGGTCCGGACAAAGACTTCTGCCCTGCTGTAGCTCAGATGTTGGAGGAAAgaataaggaaataaaatatactcGATGCCACAGACACTCAGGAAAGCTTGCCCACACGACGTAGTGGATGTTACACAACCTTTCCGTCGGTGTAAAATATTACCaaacacataataaacaaaaagagtgaaaatggCCGGCCTCTGATTAGCcaattagcctttttttttccccccaagaaGCTAACAGGATGTTTATTGTCCCGACGGTTCTGGTCATTTAGCCAgcattacatctttttttttaaaaagaaaataaacactcaATTAAGTAATggcttctaaaaaaaaaccttcagataAATATGTAACTTTTGTGATAAACTGCTCGGCTAGTGTGAGCTAGCTTACAGCTGATCAGGAGGCTGAAGCTAGCCGCCATTTTCTTCTTTAACAACCAGAAAGGTATACTATTTCAAATTTATTCGAGGGCAGGTCACAAATGTATCATAACCTCGCGTGAAAATGAAACAGTATGAATGACAAGCgacaatatattaatttttttaaactagctttCTTTGTTCAGGCAGAGGAACCGAGCTAACGGCCATTTCACAACCCTGCGCGTGCGTTAAACAAGCTACGGATAGCCAGCAActgtataaatttaaaacataacGGAAAAGAATTACCTTTCCTAAAAGACCTTCAGCTTTGTCGTGGTTCTGTTTtcaaaggagagaaaaaaaatagacagaaaagaaaaacttgaGCTGTTTAAACGTTAACTACTTATCTCGGCAAAAAACAATGCGCCCCGAGCTAAGCTAGGCTGACGCTAGTGTTAAAGGGAgttaaatgctaatgctaacttcACCGGTAAGGAGGACACCACGCACCATCTGCG

Function

GO: NA

KEGG:

id description
ko05322 Systemic lupus erythematosus

RNA

RNA id representative length rna type GC content exon number start site end site
TU209512 True 1072 lncRNA 0.39 1 6543999 6545070

Neighbor

gene id symbol gene type direction distance location
galnt18b galnt18,galnt18b,LOC107584699,LOC107686803,LOC106587200 coding downstream 82173 6358137 ~ 6461826 (-)
LOC113536569 LOC108271057,LOC108442067,LOC107741992,LOC107680499,LOC107657964 coding downstream 247123 6227094 ~ 6296876 (-)
LOC113536415 acyp2,LOC105896825 coding downstream 434627 6100029 ~ 6109372 (-)
LOC113536414 c10h2orf73 coding downstream 449221 6085672 ~ 6094778 (-)
sptbn1 sptbn1,LOC108270927,LOC108442064 coding downstream 459192 6001691 ~ 6084807 (-)
ctr9 ctr9 coding upstream 10649 6555719 ~ 6567757 (-)
ampd3a ampd3,ampd3a,LOC108433033 coding upstream 76834 6621904 ~ 6643123 (-)
adma adm coding upstream 103678 6648748 ~ 6651135 (-)
swap70a LOC108271193 coding upstream 249469 6794539 ~ 6807030 (-)
LOC113536768 LOC108270562 coding upstream 264753 6809823 ~ 6816713 (-)
G176959 NA non-coding downstream 84368 6458366 ~ 6459631 (-)
G176938 NA non-coding downstream 185912 6357574 ~ 6358087 (-)
G176855 NA non-coding downstream 282759 6260797 ~ 6261240 (-)
G176832 NA non-coding downstream 355711 6184335 ~ 6188288 (-)
G176816 LOC108271104 non-coding downstream 367645 6172198 ~ 6176354 (-)
G176992 eif4g2,LOC108433007 non-coding upstream 5844 6550914 ~ 6551262 (-)
G176991 eif4g2,LOC108433007,LOC101472382,LOC103379577,LOC100694876,LOC102291832,LOC102792130 non-coding upstream 6255 6551325 ~ 6551582 (-)
LOC117598400 NA non-coding upstream 33934 6579004 ~ 6589296 (-)
G177097 NA non-coding upstream 193251 6738321 ~ 6738608 (-)
G177374 notum non-coding upstream 513462 7058532 ~ 7059550 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other downstream 835695 5696380 ~ 5708304 (-)
trip4 trip4 other downstream 1347181 5139610 ~ 5196818 (-)
G176307 NA other downstream 1463104 5079817 ~ 5080895 (-)
lto1 oraov1 other downstream 2039670 4498946 ~ 4504329 (-)
bola3 bola3,LOC107686851,LOC107727091 other downstream 2547546 3992726 ~ 3996453 (-)
LOC113536608 LOC108270551 other upstream 311685 6856755 ~ 6861348 (-)
si:dkey-56d12.4 LOC108270721 other upstream 935352 7480422 ~ 7484117 (-)
si:ch1073-365p7.2 NA other upstream 1035364 7580434 ~ 7588815 (-)
igf1rb LOC108271091 other upstream 1130846 7675916 ~ 7764430 (-)
trnar-ucg_7 NA other upstream 1699579 8244649 ~ 8244721 (-)

Expression


Co-expression Network