G177141


Basic Information

Item Value
gene id G177141
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 6904969 ~ 6907752 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU209692
TGTTTGGCCACCTGCTCTGAGACCAGcttaattttctttttgatatCCTCAATGAGAAGGTTGAGCTGATTTCGGACAAACTCCAAGCGGTCGATCAgatactctctctcctccagAGAGGCCACCCTGATAACGGTTACAAAGATTATCACAGATGCATCTTGCTGCTTATGAATCTTACGAATATACACAACAGAATACAGATCAACTCTTTATAACAGACATAATGTATGATTGAGATATTAAACTGTGCTCTGAATTTCACACTGGCCTGTTGCAATAAGTTAGTAGATATACAGAACCAACTGTGCCAGAGTGAAACTCAGAAGACAGAACTAAAGAGAGTGGACCCACCTCTTCTCAGCGGCAGCAATGTGGATTTGATCCATGATGCCTTTAACACATTCAGTGATCTGCTTTGCCCTGATTGTGTGCTGCTCAAACTTTGTTTTCACTGCTGACTGCGAGATACACTCCTGCGAGGCCACATACATGTTACTGGGATGAGCGACACTTAAAGGGGTGAGATACTGACCTGCTGCTCTGGCTCGATGACGCGAAAGGACAGCAGCAGGTCTGTACCATCGTAGCATCATGCTTCATCTCGCAGTAactttcagtaaataaaatgcaaaagcaATACATTCAAATCAGGTCaaagagaaaagtaaaaaagactTAAACATCACAAATCACAATAATCTGGAACAGAAATTAAACTATATCAACAACAAAAGAATGAACAGGTACTcaacaaatactgtattttctgAATTATAAGTTGGTCATATTGTGTATGAGGGGCTCCCCGCTAAATTCTGTCTGCTTGAACACATCATTATGCAGCAATGTTTCATGCAATTCGCTTTATaatattgatatggtgataAATTAACTCACAACACACTTTTCTGATATATCGCCAGGATCATCATTATTTTAGGACTCTGATTTGAAGCAGCAGATTAGATGTTAAAATTTAtactaaatctttaaaattgaaaaatttttacattctttaaaaaatgttcctcATTTATGTAGACATTAAATTGTCACTTAATTTAgttcttcacattttttttttaaatccaacactactgttttgctggcagtttgttagcaaacctacaTATCACATCATATAGTGTATgacagaaatgtcttcaagtatcacgtgatatttttgtcatatcacccacccctaaACACTAACAAATGGGAAGCTCACAATTAGGCTTGAgcaaaaatcaaatattttgcTGTATGAGAATTTAAAATCTTACAGTCCAAAAAATACAGTACTCAAAAATCATACAAAGAACATCAAAATAATCCACAAAAGACTGATACATCAAATAGGAAAACACAAGTGTAAAGGTGAACTGAGGAGAAGGGTGTCCTCGCCTTAGCAAATCTAGACTTCAGCAATGAACACACAGATTGACGAAAAAGAGCACATGGGCCTAGGAAAAGGAAATGGCTAGGTGGGAAATAAACTGGCAGAGTAATTAAGCTACACTTCAGCAAAGCACTACAgtgtggaaaggaaaaaaaaaaaaaaaacaactttgcatgtgtgtggtgtACATAAAAAGTTTTGCTTGTGGTGTCAGAAAGCAGTCAAGAAATGATCTGGCAATAATTTATACTTGAAAAGAAGTAAATTCTAATTGATcaattttctgttcatttcaccaatattaaaatgaaaatctttatGTTTTGACTCAACTTTTTATCCCAGTGctacaatattttaatttacattaccTGTAGCTTTAAGAAATCAATTGAAAACGTTTGCCTAAATGTGTTAATTCCTCTGTATTTACACTGAAACATGGTTTACTGTAGACAAGTTCTACAGACGTAAGAGGAAAACCATCAGCTTGTGATAATCCCTATGTTAACTCACTAGAATGTTTAGTGGCTAAGACAGTTTTCAACCGATCATCAATCTGTATTTCAATTCCCTAAACAGCCCTTCTCATCTTAAagaaacattcatttaaaattttcctAAATACTTGATTCTGATAATTAGAGTCAGTGACATGCATggctttcttctttctcttctttcatttttcttacttAGGGGCACCAGACTTAATATGACCAAGgctctagattttttttctattgcttttttaattttaaaatatttttttccagtaaaACTCCACTGCCATCTATATCGTCACGTCTCCCTACTCTAACGCACTTGCTTCAAATCAAACAGCTTCCACAcgatattaatttttttcatcctgaattttttttgttctggtAGTAAACAGACATCATATCCATGGTCGTTTTAGCAATCACTTGCCTCAAACGTCCTCTCAAAGTTCTGGAACTCCTTCAGTCTCTCCTGGAAGCCTTCTGCTAATGCTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU209692 True 2405 lncRNA 0.36 2 6904969 6907752

Neighbor

gene id symbol gene type direction distance location
LOC113536389 gnb4,LOC108270972,LOC108443894,LOC108440866 coding upstream 4904 6890188 ~ 6900065 (+)
LOC113536670 LOC108270652,LOC108443884 coding upstream 51328 6851440 ~ 6853641 (+)
traf3ip2b LOC108270566 coding upstream 73229 6823407 ~ 6831740 (+)
LOC113536733 LOC108270651,LOC108270616 coding upstream 82856 6820804 ~ 6822113 (+)
sbf2 sbf2,LOC106587205,LOC106562098 coding upstream 122770 6656484 ~ 6782199 (+)
trappc10 trappc10,LOC107713874,LOC102780331 coding downstream 9355 6917107 ~ 6940664 (+)
LOC117598414 NA coding downstream 43342 6951094 ~ 6953455 (+)
notum1b notum,LOC108443886,LOC108438914,LOC107732149 coding downstream 150736 7058488 ~ 7075682 (+)
tmc8 NA coding downstream 200571 7108323 ~ 7122257 (+)
si:dkey-93h22.7 NA coding downstream 226167 7133919 ~ 7141157 (+)
G177165 NA non-coding upstream 18566 6885578 ~ 6886403 (+)
LOC113536609 NA non-coding upstream 29922 6863825 ~ 6875047 (+)
G177159 NA non-coding upstream 44739 6859304 ~ 6860230 (+)
G176964 NA non-coding upstream 349962 6554594 ~ 6555007 (+)
LOC117598391 NA non-coding upstream 804942 6094203 ~ 6100027 (+)
G177180 NA non-coding downstream 45891 6953643 ~ 6960207 (+)
G177166 NA non-coding downstream 52735 6960487 ~ 6961539 (+)
G177233 NA non-coding downstream 247369 7155121 ~ 7155344 (+)
G177268 NA non-coding downstream 363763 7271515 ~ 7272538 (+)
G177274 NA non-coding downstream 371811 7279563 ~ 7279767 (+)
G175977 pacsin3 other upstream 2243833 4656605 ~ 4661136 (+)
ano1a ano1 other upstream 2259771 4613406 ~ 4645198 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other upstream 2605602 4281244 ~ 4299367 (+)
btbd10b btbd10,btbd10b,LOC107709927,LOC107727107 other upstream 3246679 3647355 ~ 3658290 (+)
pth1b NA other upstream 3257854 3645743 ~ 3647115 (+)
LOC113536390 LOC108271079 other downstream 214633 7122385 ~ 7132468 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other downstream 360079 7267831 ~ 7271320 (+)
trnar-ucg_6 NA other downstream 1335603 8243355 ~ 8243648 (+)
trnar-acg_6 NA other downstream 1337200 8244952 ~ 8245024 (+)
trnar-ucg_8 NA other downstream 1340264 8248016 ~ 8248088 (+)

Expression


Co-expression Network