rpl37a (rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628)


Basic Information

Item Value
gene id rpl37a
gene name rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7267831 ~ 7271320 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU209855
GGTAAATCGCGCATGCGCACTTGGTCCTCCCTCTTTGGCTTCGCACCTCTTCTGCTAAAATGGCCAAGCGCACCAAGAAGGTGGGGATTGTCGGGAAATATGGTACCCGTTATGGTGCCTCGCTCAGGAAGATGGTGAAAAAGATTGAGATCAGCCAGCACGCCAAGTACACCTGCTCCTTCTGTGGCAAGaCCAAGATGAAGAGACGAGCTGTTGGCATCTGGCACTGTGGGTCCTGCATGAAAACCGTAGCTGGAGGTGCCTGGACATACAACACAACGTCTGCTGTCACAGTCAAGTCTGCCATCAAGAGACTGAAGGAGATGAAGGACCAGTAAACTGGGACTTTGTTTTTGTACAGATTAAAACCACCTTGTCTCGGACTCTGCATTTTCAATGTGGCTCGTTGGAACATCCCACAATAAATTTAAGTCTTGAGCGGGATTTTGCTTCTGATTCTTTTGTTCTGTATTAAAGCCAAAAAGGACCAGAA
>XM_026930353.2
CTCAGCTTATTAGTCGGTCCTCTGAAATCCCAGAATCCCCCGCGGTCGTGTATGGTAAATCGCGCATGCGCACTTGGTCCTCCCTCTTTGGCTTCGCACCTCTTCTGCTAAAATGGCCAAGCGCACCAAGAAGGTGGGGATTGTCGGGAAATATGGTACCCGTTATGGTGCCTCGCTCAGGAAGATGGTGAAAAAGATTGAGATCAGCCAGCACGCCAAGTACACCTGCTCCTTCTGTGGCAAGaCCAAGATGAAGAGACGAGCTGTTGGCATCTGGCACTGTGGGTCCTGCATGAAAACCGTAGCTGGAGGTGCCTGGACATACAACACAACGTCTGCTGTCACAGTCAAGTCTGCCATCAAGAGACTGAAGGAGATGAAGGACCAGTAAACTGGGACTTTGTTTTTGTACAGATTAAAACCACCTTGTCTCGGACTCTGCATTTTCAATGTGGCTCGTTGGAACATCCCACAATAAATTTAAGTCTTGAGCGGGA

Function

symbol description
zgc:171772 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Orthologous to human RPL37A (ribosomal protein L37a).
rpl37a A structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Located in cytosolic ribosome. Part of cytosolic large ribosomal subunit.

NR:

description
PREDICTED: 60S ribosomal protein L37a

GO:

id name namespace
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0006413 translational initiation biological_process
GO:0006414 translational elongation biological_process
GO:0006415 translational termination biological_process
GO:0019083 viral transcription biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02921 RP-L37Ae, RPL37A; large subunit ribosomal protein L37Ae

RNA

RNA id representative length rna type GC content exon number start site end site
TU209855 False 493 TUCP 0.48 4 7267884 7271320
XM_026930353.2 True 497 mRNA 0.50 4 7267831 7271271

Neighbor

gene id symbol gene type direction distance location
pfklb pfkl,pfklb,LOC108444469,LOC105912658 coding upstream 1502 7253361 ~ 7266329 (+)
orc2 orc2,LOC107564576,LOC107564577 coding upstream 20656 7239467 ~ 7247175 (+)
ldb1b ldb1,LOC108444470,LOC108270891,LOC103353370,LOC103150493,LOC107702035,LOC104963201,LOC101479469,LOC107700700,LOC107567630,LOC107564569,LOC104922276 coding upstream 30736 7206539 ~ 7237095 (+)
cant1b cant1 coding upstream 88068 7166588 ~ 7179763 (+)
afmid afmid coding upstream 102910 7156800 ~ 7164921 (+)
eif4a3 eif4a3 coding downstream 1523 7272843 ~ 7279382 (+)
opn6a LOC108271086 coding downstream 10777 7282097 ~ 7289517 (+)
map1lc3c map1lc3c,LOC107702025 coding downstream 85599 7356919 ~ 7361930 (+)
tomm20b tomm20,tomm20b,LOC107740066,LOC107701232,LOC107661159,LOC100703030,LOC108247505 coding downstream 212923 7484243 ~ 7492243 (+)
tbce tbce coding downstream 229758 7501078 ~ 7513789 (+)
G177233 NA non-coding upstream 112487 7155121 ~ 7155344 (+)
G177166 NA non-coding upstream 306292 6960487 ~ 6961539 (+)
G177180 NA non-coding upstream 307624 6953643 ~ 6960207 (+)
G177141 NA non-coding upstream 360079 6904969 ~ 6907752 (+)
G177165 NA non-coding upstream 381428 6885578 ~ 6886403 (+)
G177268 NA non-coding downstream 195 7271515 ~ 7272538 (+)
G177274 NA non-coding downstream 8243 7279563 ~ 7279767 (+)
G177271 NA non-coding downstream 22680 7294000 ~ 7344522 (+)
G177302 NA non-coding downstream 67105 7338425 ~ 7343270 (+)
G177487 NA non-coding downstream 138765 7410085 ~ 7410291 (+)
LOC113536390 LOC108271079 other upstream 135363 7122385 ~ 7132468 (+)
G175977 pacsin3 other upstream 2606695 4656605 ~ 4661136 (+)
ano1a ano1 other upstream 2622633 4613406 ~ 4645198 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other upstream 2968464 4281244 ~ 4299367 (+)
btbd10b btbd10,btbd10b,LOC107709927,LOC107727107 other upstream 3609541 3647355 ~ 3658290 (+)
trnar-ucg_6 NA other downstream 972035 8243355 ~ 8243648 (+)
trnar-acg_6 NA other downstream 973632 8244952 ~ 8245024 (+)
trnar-ucg_8 NA other downstream 976696 8248016 ~ 8248088 (+)
LOC113536578 NA other downstream 982101 8253421 ~ 8270750 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other downstream 3539350 10810670 ~ 10850923 (+)

Expression


Co-expression Network