G177271


Basic Information

Item Value
gene id G177271
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7294000 ~ 7344522 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU209859
cttttattattgtattatattgatAAATGTCTtccatctgaaaaaaaagaaaatacaacatgaaaaagaataaactataaatatatacaagtgAATTCACATATTTATCCAATTTGTATAATCTCTCTTTACATCACATGGGTTAGAATTTCAATTCTGGTTCTTCACAAGTTCCAAAACTCACCCATATCAGTACATACAACCCTGTTTATGATTATAATATCTGTAGTGAGGGAATGCAAATGCAAAGCCACTCTTGGTCAACGGGTTCACTTCCTAAATGCACTAAAAATACCCACCTCACTGAGTACTGCTCTGAATCATAGGACACAACACTCCAGACGTGACACAAGATGATCAAAGATCATTCCTGTGTCCTGTGTCCTTTTAAATCTGTGTCACTGTTCAAACCTGTGGCCTAATAATTAACAGATTAACTGTATACTTAGATGAAGCAATGCAGGAACCGGTGCAGGCATGTGGGAGTGTTTAAGTCCACACTGGATTACAGGGGTCACTCACGGGCAGTGTAATAGTGCTGCTTTATGATGTGGTTTATTTCTGTTCTAATAAAAACACCAGCACTCAGTCTGTCACTTACTGTACATTCACTTTAACCTCTTTAAACTAAGTCAGCCAATAAATTCCCATCTCTGACCAGCAGGAGGCACTGTTATAGTGAATCAATGATGATTCTTGGATTTAATATTAAGAACAACTCAGATGTCTGAAAATGGACTGTTTCATTAGTTTGACACACAAGACAGTAAAAATGTAAGCTATTAAAGCaataatttagacattttcctCATTATCTTAAATGTAGTCGTTTAGTCATGATGAACAAACTTTATATTTCCACTGGACCTACAAGTAAAAAGCCTAAAGCCACCAGTATGTCATCATACAAGCTTTAAGACATCATTTGACCACATAAAACAACTTGCAAGCAAAATAAGTCTATATTATATcaagaataaaacaattaggggcatgctgttataaggaAATCATCAATTAGACAATGATTACTTTTTTATCAATTAAAGCCTTTTTATCTGTTAATAGTATctgttaataaaatttaatactGTGGAACGTCTGCGAAACCAGTTAgtaacagatataaacagttgtttcctcaccagcttcagTTTCTTCTCTAAGTTAATCACAGCtggtcatgttactgagaaagtgcTAAGCACAAAATTACAGCTATAACTGTGACTgtttcaaagtgctgacactggagactccttcccaaaTGCTAAATAGACATCTTTTCATTGAAAACTTTAGcctatcaacaattacactttttaaaatccgtttatgtggtgcgtccaccatgcaagtccctgcacaagttgttactatagaaacaataacattagaacgagtgcattgatTTAaactggaactactgtcagagctgcagctatagaaaattaatcaacaccttttgaccaatcagaatcgagaattcaacagcgctgtggtatgaaacaaagcaaaacaaagaatAAGATTCTGGCTTCAAGTTGGCTGCTGTTTTAACTATGTGACAATTCTGAGACACTGAACAACTTGACACGGTTTGAGACGAGTGTGTAATGACTTACACACGtagtttgcacaatgctaaactggtatcTGTAAGCATCTCTTACGTATTAGATACATTAACTTCACAGCTCTAGTGTAAAactaaaagggaaaaaaaaaactcaaacaaacaAGGAAAAGCATAAATtgtgtgcattttaatattGGCCATCTATTTGCTTTATTTCGGTTTTGCTAAACAAAGCAGCACACAAAACATCTTTGCTGGAATATGAAGCAGACAAACCTgacaatacttttttaaatcatcttcAATATTCTGGTATTACGGTGGTATTAAAAATCCCAGCTAACGAGCTGAATCATTTGTAGCCTCTACACAAAGAGGAGCAGATTATAggatcatttattttttaaagggtACTAGGGACGTTTAAAATTTAATAAGATATAcatattctatatttatatttgtttatcttACATATGTTCAGGTGGCACTGTTTAAAGCAGTAATTTCATTTGTCCAagacaatgacaataaactccttAATCTTGAATCTTTCATTACAGGGCAAACCAGTGAAACAGCAGACATCAGTGTTGTCCTTTAAGACTGTTTaattttaaaggaacagttctgacaaaaaagaaatggatTTTCTCCTCACCCTAACGTAGTCAGTCGATCAGTGTAGTAagttctttatcctggtcagggtcgtgatGGATCCGAAGCCTGTGTGAGGAAAACTAAGCTGCcaggcaggaacacaccctggatgggacacacGCTTTCACATCTAGGTGCAATTTAGAGTACCCAGTCTACCTACTGGCATTGTCTGGGAggtggaggaaaccagagaagccACAGGAAACCCATGAAAACACAGATAGTATCAGGGTTTCCATACCACCTTACTGCCCAACATatctttaatgttttttgtgtgttgtgttttagagtgcaccatgcacacttGTTCACTAGTAAGATGACTACATACAGATGTGCTGTAATGTtagaattattagaattatagaattattagtttaaaatgaagaatttcattatttgttaACAGCAGGCCAACAGACTGAAGTGATGGCGCTAAACTAAAgaagtgattttttatttttttttttagatgcaaAACACAGTCTGGCTGACTGAGTACGTTTGGTCCAAGTGGAAAATGGTGTACATTTCACTTCTGgctgaactgttcctttaaaaccATGCATCACTGTGTAACGTTTATTAgctttttttgcactttaatCCCCGCTGCATTTCATGTTCATAAATAGTTTGTTTGCAAACACTTTAAAAACTATACATAATGAATTTCTAAAATCATTCTGCACCTGAAAGAACAAAAGGACATATTTAGCAGTACAGAATGcacacgcacgcgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU209859 True 3051 lncRNA 0.36 2 7294000 7344522

Neighbor

gene id symbol gene type direction distance location
opn6a LOC108271086 coding upstream 4483 7282097 ~ 7289517 (+)
eif4a3 eif4a3 coding upstream 14618 7272843 ~ 7279382 (+)
pfklb pfkl,pfklb,LOC108444469,LOC105912658 coding upstream 27671 7253361 ~ 7266329 (+)
orc2 orc2,LOC107564576,LOC107564577 coding upstream 46825 7239467 ~ 7247175 (+)
ldb1b ldb1,LOC108444470,LOC108270891,LOC103353370,LOC103150493,LOC107702035,LOC104963201,LOC101479469,LOC107700700,LOC107567630,LOC107564569,LOC104922276 coding upstream 56905 7206539 ~ 7237095 (+)
map1lc3c map1lc3c,LOC107702025 coding downstream 12397 7356919 ~ 7361930 (+)
tomm20b tomm20,tomm20b,LOC107740066,LOC107701232,LOC107661159,LOC100703030,LOC108247505 coding downstream 139721 7484243 ~ 7492243 (+)
tbce tbce coding downstream 156556 7501078 ~ 7513789 (+)
gpr137bb gpr137b,LOC107558369,LOC107703026,LOC105890320,LOC106564834 coding downstream 208451 7552973 ~ 7561495 (+)
trnae-cuc_24 NA coding downstream 257704 7602226 ~ 7602297 (+)
G177274 NA non-coding upstream 14233 7279563 ~ 7279767 (+)
G177268 NA non-coding upstream 21462 7271515 ~ 7272538 (+)
G177233 NA non-coding upstream 138656 7155121 ~ 7155344 (+)
G177166 NA non-coding upstream 332461 6960487 ~ 6961539 (+)
G177180 NA non-coding upstream 333793 6953643 ~ 6960207 (+)
G177487 NA non-coding downstream 65563 7410085 ~ 7410291 (+)
G177497 irf2bp2,LOC103039790,LOC108430070 non-coding downstream 89615 7434137 ~ 7436825 (+)
G177498 NA non-coding downstream 92637 7437159 ~ 7437427 (+)
G177506 NA non-coding downstream 96714 7441236 ~ 7441720 (+)
LOC117598442 NA non-coding downstream 98495 7443017 ~ 7445287 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other upstream 22680 7267831 ~ 7271320 (+)
LOC113536390 LOC108271079 other upstream 161532 7122385 ~ 7132468 (+)
G175977 pacsin3 other upstream 2632864 4656605 ~ 4661136 (+)
ano1a ano1 other upstream 2648802 4613406 ~ 4645198 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other upstream 2994633 4281244 ~ 4299367 (+)
trnar-ucg_6 NA other downstream 898833 8243355 ~ 8243648 (+)
trnar-acg_6 NA other downstream 900430 8244952 ~ 8245024 (+)
trnar-ucg_8 NA other downstream 903494 8248016 ~ 8248088 (+)
LOC113536578 NA other downstream 908899 8253421 ~ 8270750 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other downstream 3466148 10810670 ~ 10850923 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004401 NA non-coding NC_007122.7 CM002895.2 44852582 ~ 44858601 (-)
grasscarp (Ctenopharyngodon idella) G105146 NA non-coding CI01000018 null 4096332 ~ 4096565 (-)
eurasian perch (Perca fluviatilis) G88709 NA non-coding NC_053119.1 CM020916.1 29098269 ~ 29098610 (-)
tiger barb (Puntius tetrazona) G80814 NA non-coding NC_056709.1 CM032078.1 11549615 ~ 11555713 (+)