G177404


Basic Information

Item Value
gene id G177404
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7137629 ~ 7138904 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU210004
GATATTAAGTTGAAAAATaatggagtattcctttaagcaTTAATTTAATGGAAAGGCATGAAATGTTTTACTCACGTAACACCACTCCATAAATGCAACAAGCTAACACGGCACAAATCAGCAGCGAGAAAAAGGTGAAAACGGTGGCTGCCACTGCAGTTGGTATTTTGTTAAACGCTtcataagTAATCAGAGTCACTGGACTGCTCACTCCTGTAGTGTTGTCAAATGAGTTAAAGGCCTCGCAGTGGTAGAACCCAGCACTGACTGGGTGCAACGTGACCATGAGGCCTGCGTCGTTTGGGTGGAATGTTCTGTAAAACGGCCCTTGGTTCTCCAGTCTTTTCTCATTGCAGAACCAGTAGTATCGGGGAAACATTCCTTTCTCCACACTGCAATAGAGCCATACACCATACACTTCGAAGTCCTGCCTTACAGCTTTTTCCAGTCTTATTCTCACAGGGCCCCCTACTGA

Function

GO:

id name namespace
GO:0008144 drug binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0036094 small molecule binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210004 True 475 lncRNA 0.44 2 7137629 7138904

Neighbor

gene id symbol gene type direction distance location
tmc6b tmc6 coding downstream 29420 7079500 ~ 7108209 (-)
aspscr1 aspscr1 coding downstream 81705 7018805 ~ 7055924 (-)
LOC113536680 LOC108270653 coding downstream 126114 7009298 ~ 7011515 (-)
pycr1b pycr1,pycr1b,LOC107572052,LOC107564555,LOC108443889,LOC108236293 coding downstream 142061 6988303 ~ 6995568 (-)
mafgb mafg,mafgb coding downstream 158153 6961636 ~ 6979476 (-)
tk1 tk1,LOC107713239,LOC107726782 coding upstream 11775 7150679 ~ 7154709 (-)
ogal LOC108270888,LOC108412751 coding upstream 41304 7180208 ~ 7190834 (-)
si:dkey-93h22.8 LOC108270890 coding upstream 53351 7192255 ~ 7202864 (-)
cfap410 c10h21orf2,cunh21orf2,LOC107713232,LOC107564578 coding upstream 109444 7248348 ~ 7252593 (-)
strn strn,LOC108271087,LOC108430145,LOC107702041,LOC107701064 coding upstream 157803 7296707 ~ 7354330 (-)
G177374 notum non-coding downstream 78079 7058532 ~ 7059550 (-)
G177097 NA non-coding downstream 399021 6738321 ~ 6738608 (-)
LOC117598400 NA non-coding downstream 548333 6579004 ~ 6589296 (-)
G176991 eif4g2,LOC108433007,LOC101472382,LOC103379577,LOC100694876,LOC102291832,LOC102792130 non-coding downstream 586047 6551325 ~ 6551582 (-)
G176992 eif4g2,LOC108433007 non-coding downstream 586367 6550914 ~ 6551262 (-)
LOC117598441 NA non-coding upstream 17324 7156228 ~ 7157621 (-)
G177448 NA non-coding upstream 128657 7267561 ~ 7271271 (-)
G177455 NA non-coding upstream 150981 7289885 ~ 7290092 (-)
G177459 NA non-coding upstream 154013 7292917 ~ 7293170 (-)
G177469 NA non-coding upstream 236123 7375027 ~ 7375235 (-)
LOC113536608 LOC108270551 other downstream 276281 6856755 ~ 6861348 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other downstream 1429325 5696380 ~ 5708304 (-)
trip4 trip4 other downstream 1940811 5139610 ~ 5196818 (-)
G176307 NA other downstream 2056734 5079817 ~ 5080895 (-)
lto1 oraov1 other downstream 2633300 4498946 ~ 4504329 (-)
si:dkey-56d12.4 LOC108270721 other upstream 341518 7480422 ~ 7484117 (-)
si:ch1073-365p7.2 NA other upstream 441530 7580434 ~ 7588815 (-)
igf1rb LOC108271091 other upstream 537012 7675916 ~ 7764430 (-)
trnar-ucg_7 NA other upstream 1105745 8244649 ~ 8244721 (-)
trnar-acg_7 NA other upstream 1107799 8246703 ~ 8246775 (-)

Expression


Co-expression Network