Gene
RNA
| Item | Value |
|---|---|
| gene id | G177459 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047605.1 |
| NCBI id | CM018551.1 |
| chromosome length | 26640196 |
| location | 7292917 ~ 7293170 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| id | description |
|---|---|
| ko00710 | Carbon fixation in photosynthetic organisms |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU210078 | True | 254 | lncRNA | 0.34 | 1 | 7292917 | 7293170 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| cfap410 | c10h21orf2,cunh21orf2,LOC107713232,LOC107564578 | coding | downstream | 40324 | 7248348 ~ 7252593 (-) |
| si:dkey-93h22.8 | LOC108270890 | coding | downstream | 90053 | 7192255 ~ 7202864 (-) |
| ogal | LOC108270888,LOC108412751 | coding | downstream | 102083 | 7180208 ~ 7190834 (-) |
| tk1 | tk1,LOC107713239,LOC107726782 | coding | downstream | 138208 | 7150679 ~ 7154709 (-) |
| tmc6b | tmc6 | coding | downstream | 184708 | 7079500 ~ 7108209 (-) |
| strn | strn,LOC108271087,LOC108430145,LOC107702041,LOC107701064 | coding | upstream | 3537 | 7296707 ~ 7354330 (-) |
| irf2bp2b | irf2bp2 | coding | upstream | 141149 | 7434319 ~ 7437490 (-) |
| rbm34 | rbm34 | coding | upstream | 199331 | 7492501 ~ 7500900 (-) |
| nid1a | nid1 | coding | upstream | 222077 | 7515247 ~ 7547820 (-) |
| ero1b | ero1b | coding | upstream | 271210 | 7564380 ~ 7577840 (-) |
| G177455 | NA | non-coding | downstream | 2825 | 7289885 ~ 7290092 (-) |
| G177448 | NA | non-coding | downstream | 21646 | 7267561 ~ 7271271 (-) |
| LOC117598441 | NA | non-coding | downstream | 135296 | 7156228 ~ 7157621 (-) |
| G177404 | NA | non-coding | downstream | 154013 | 7137629 ~ 7138904 (-) |
| G177374 | notum | non-coding | downstream | 233367 | 7058532 ~ 7059550 (-) |
| G177469 | NA | non-coding | upstream | 81857 | 7375027 ~ 7375235 (-) |
| G177491 | NA | non-coding | upstream | 120797 | 7413967 ~ 7414185 (-) |
| LOC113536470 | NA | non-coding | upstream | 122771 | 7415941 ~ 7417038 (-) |
| G177539 | NA | non-coding | upstream | 129853 | 7423023 ~ 7423276 (-) |
| G177547 | NA | non-coding | upstream | 147009 | 7440179 ~ 7440388 (-) |
| LOC113536608 | LOC108270551 | other | downstream | 431569 | 6856755 ~ 6861348 (-) |
| LOC113536561 | srsf7,LOC107665899,LOC107693014 | other | downstream | 1584613 | 5696380 ~ 5708304 (-) |
| trip4 | trip4 | other | downstream | 2096099 | 5139610 ~ 5196818 (-) |
| G176307 | NA | other | downstream | 2212022 | 5079817 ~ 5080895 (-) |
| lto1 | oraov1 | other | downstream | 2788588 | 4498946 ~ 4504329 (-) |
| si:dkey-56d12.4 | LOC108270721 | other | upstream | 187252 | 7480422 ~ 7484117 (-) |
| si:ch1073-365p7.2 | NA | other | upstream | 287264 | 7580434 ~ 7588815 (-) |
| igf1rb | LOC108271091 | other | upstream | 382746 | 7675916 ~ 7764430 (-) |
| trnar-ucg_7 | NA | other | upstream | 951479 | 8244649 ~ 8244721 (-) |
| trnar-acg_7 | NA | other | upstream | 953533 | 8246703 ~ 8246775 (-) |
