G177491


Basic Information

Item Value
gene id G177491
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7413967 ~ 7414185 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU210110
GCTGACTAATATTACCATAGTGCTCTGtttaaaacacaatattatGCAAGGATGCGAAAAGGCTAAtagtgatgtcacatgatcaggTTTGTTATTAGCTGATCAAAGAGAATTTACTAAGTTCTTCCTTTGTGAAAACATGGATGTCTGTCACTCAGCAAAATGAGGGCCATTCACCAATTCGTTCTTTGTCCAccacatactcacacatacatgGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210110 True 219 lncRNA 0.38 1 7413967 7414185

Neighbor

gene id symbol gene type direction distance location
strn strn,LOC108271087,LOC108430145,LOC107702041,LOC107701064 coding downstream 59637 7296707 ~ 7354330 (-)
cfap410 c10h21orf2,cunh21orf2,LOC107713232,LOC107564578 coding downstream 161374 7248348 ~ 7252593 (-)
si:dkey-93h22.8 LOC108270890 coding downstream 211103 7192255 ~ 7202864 (-)
ogal LOC108270888,LOC108412751 coding downstream 223133 7180208 ~ 7190834 (-)
tk1 tk1,LOC107713239,LOC107726782 coding downstream 259258 7150679 ~ 7154709 (-)
irf2bp2b irf2bp2 coding upstream 20134 7434319 ~ 7437490 (-)
rbm34 rbm34 coding upstream 78316 7492501 ~ 7500900 (-)
nid1a nid1 coding upstream 101062 7515247 ~ 7547820 (-)
ero1b ero1b coding upstream 150195 7564380 ~ 7577840 (-)
mctp2b LOC108271124,LOC108428479 coding upstream 180830 7595015 ~ 7623473 (-)
G177469 NA non-coding downstream 38732 7375027 ~ 7375235 (-)
G177459 NA non-coding downstream 120797 7292917 ~ 7293170 (-)
G177455 NA non-coding downstream 123875 7289885 ~ 7290092 (-)
G177448 NA non-coding downstream 142696 7267561 ~ 7271271 (-)
LOC117598441 NA non-coding downstream 256346 7156228 ~ 7157621 (-)
LOC113536470 NA non-coding upstream 1756 7415941 ~ 7417038 (-)
G177539 NA non-coding upstream 8838 7423023 ~ 7423276 (-)
G177547 NA non-coding upstream 25994 7440179 ~ 7440388 (-)
G177550 NA non-coding upstream 27706 7441891 ~ 7442395 (-)
G177559 NA non-coding upstream 56789 7470974 ~ 7471210 (-)
LOC113536608 LOC108270551 other downstream 552619 6856755 ~ 6861348 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other downstream 1705663 5696380 ~ 5708304 (-)
trip4 trip4 other downstream 2217149 5139610 ~ 5196818 (-)
G176307 NA other downstream 2333072 5079817 ~ 5080895 (-)
lto1 oraov1 other downstream 2909638 4498946 ~ 4504329 (-)
si:dkey-56d12.4 LOC108270721 other upstream 66237 7480422 ~ 7484117 (-)
si:ch1073-365p7.2 NA other upstream 166249 7580434 ~ 7588815 (-)
igf1rb LOC108271091 other upstream 261731 7675916 ~ 7764430 (-)
trnar-ucg_7 NA other upstream 830464 8244649 ~ 8244721 (-)
trnar-acg_7 NA other upstream 832518 8246703 ~ 8246775 (-)

Expression


Co-expression Network