G177498


Basic Information

Item Value
gene id G177498
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7437159 ~ 7437427 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU210117
ATAGTTTAGTAAGCGCGACTCCAAAATTATGgagtgaatgaattaaaaaaaacaaataaaaaaatctcagtttgaATAGCTGCGTTTTGTTTAGGTTACACAAAGGAGAAGAAATCTAAATGTGCGTTTTGTACTTACAGTAGATCTTACAGTATTTAGTCAAATATTCTCAAAAAATCATACTACACCGATTTGCGCATTGTTATGCAATCCACACATCTTGGCTTGGATCGTGCAAACGCCAGCGTTGTTAAAACTTGCACCAATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210117 True 269 lncRNA 0.34 1 7437159 7437427

Neighbor

gene id symbol gene type direction distance location
map1lc3c map1lc3c,LOC107702025 coding upstream 75229 7356919 ~ 7361930 (+)
opn6a LOC108271086 coding upstream 147642 7282097 ~ 7289517 (+)
eif4a3 eif4a3 coding upstream 157777 7272843 ~ 7279382 (+)
pfklb pfkl,pfklb,LOC108444469,LOC105912658 coding upstream 170830 7253361 ~ 7266329 (+)
orc2 orc2,LOC107564576,LOC107564577 coding upstream 189984 7239467 ~ 7247175 (+)
tomm20b tomm20,tomm20b,LOC107740066,LOC107701232,LOC107661159,LOC100703030,LOC108247505 coding downstream 46816 7484243 ~ 7492243 (+)
tbce tbce coding downstream 63651 7501078 ~ 7513789 (+)
gpr137bb gpr137b,LOC107558369,LOC107703026,LOC105890320,LOC106564834 coding downstream 115546 7552973 ~ 7561495 (+)
trnae-cuc_24 NA coding downstream 164799 7602226 ~ 7602297 (+)
si:ch211-106j24.1 LOC101154672,LOC108428483 coding downstream 344234 7781661 ~ 7794628 (+)
G177497 irf2bp2,LOC103039790,LOC108430070 non-coding upstream 334 7434137 ~ 7436825 (+)
G177487 NA non-coding upstream 26868 7410085 ~ 7410291 (+)
G177271 NA non-coding upstream 92637 7294000 ~ 7344522 (+)
G177302 NA non-coding upstream 93889 7338425 ~ 7343270 (+)
G177274 NA non-coding upstream 157392 7279563 ~ 7279767 (+)
G177506 NA non-coding downstream 3809 7441236 ~ 7441720 (+)
LOC117598442 NA non-coding downstream 5590 7443017 ~ 7445287 (+)
G177513 NA non-coding downstream 12049 7449476 ~ 7449677 (+)
G177517 NA non-coding downstream 17815 7455242 ~ 7455470 (+)
G177518 NA non-coding downstream 18126 7455553 ~ 7456605 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other upstream 165839 7267831 ~ 7271320 (+)
LOC113536390 LOC108271079 other upstream 304691 7122385 ~ 7132468 (+)
G175977 pacsin3 other upstream 2776023 4656605 ~ 4661136 (+)
ano1a ano1 other upstream 2791961 4613406 ~ 4645198 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other upstream 3137792 4281244 ~ 4299367 (+)
trnar-ucg_6 NA other downstream 805928 8243355 ~ 8243648 (+)
trnar-acg_6 NA other downstream 807525 8244952 ~ 8245024 (+)
trnar-ucg_8 NA other downstream 810589 8248016 ~ 8248088 (+)
LOC113536578 NA other downstream 815994 8253421 ~ 8270750 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other downstream 3373243 10810670 ~ 10850923 (+)

Expression


Co-expression Network