G177506


Basic Information

Item Value
gene id G177506
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7441236 ~ 7441720 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU210125
CACACAATTATACACTTAAAATAACTTCAAATATACATATCCCGtatatataccacagcaatttgatgaagattacaatttattaatgatcaACACGTCATATTTTTGAATGgtcacatttaattttgtgaattGTCTGCAAAaaaggttagttcctgttatgacttacattataactgctataaacagtcattctctcaccagtctctctttttttctttctcctcatgTTTATATGacgaaaaaaataaaaaatacatggcTTATTACCATGTCATATTACCAGGAAACCAAAAgtacaaagtcctctgtcctgaaaacataCTGATTGTTatgaagtgctgacactggacactccttccataaatattaataaacatatgtaaacttatgtgAAGTACAGCCAGTACTattgtgagagctgctgttatggcaAATTgatcaacacctactgaccaatcagatttaagaattcaacagcatgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210125 True 485 lncRNA 0.32 1 7441236 7441720

Neighbor

gene id symbol gene type direction distance location
map1lc3c map1lc3c,LOC107702025 coding upstream 79306 7356919 ~ 7361930 (+)
opn6a LOC108271086 coding upstream 151719 7282097 ~ 7289517 (+)
eif4a3 eif4a3 coding upstream 161854 7272843 ~ 7279382 (+)
pfklb pfkl,pfklb,LOC108444469,LOC105912658 coding upstream 174907 7253361 ~ 7266329 (+)
orc2 orc2,LOC107564576,LOC107564577 coding upstream 194061 7239467 ~ 7247175 (+)
tomm20b tomm20,tomm20b,LOC107740066,LOC107701232,LOC107661159,LOC100703030,LOC108247505 coding downstream 42523 7484243 ~ 7492243 (+)
tbce tbce coding downstream 59358 7501078 ~ 7513789 (+)
gpr137bb gpr137b,LOC107558369,LOC107703026,LOC105890320,LOC106564834 coding downstream 111253 7552973 ~ 7561495 (+)
trnae-cuc_24 NA coding downstream 160506 7602226 ~ 7602297 (+)
si:ch211-106j24.1 LOC101154672,LOC108428483 coding downstream 339941 7781661 ~ 7794628 (+)
G177498 NA non-coding upstream 3809 7437159 ~ 7437427 (+)
G177497 irf2bp2,LOC103039790,LOC108430070 non-coding upstream 4411 7434137 ~ 7436825 (+)
G177487 NA non-coding upstream 30945 7410085 ~ 7410291 (+)
G177271 NA non-coding upstream 96714 7294000 ~ 7344522 (+)
G177302 NA non-coding upstream 97966 7338425 ~ 7343270 (+)
LOC117598442 NA non-coding downstream 1297 7443017 ~ 7445287 (+)
G177513 NA non-coding downstream 7756 7449476 ~ 7449677 (+)
G177517 NA non-coding downstream 13522 7455242 ~ 7455470 (+)
G177518 NA non-coding downstream 13833 7455553 ~ 7456605 (+)
G177520 NA non-coding downstream 16818 7458538 ~ 7458757 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other upstream 169916 7267831 ~ 7271320 (+)
LOC113536390 LOC108271079 other upstream 308768 7122385 ~ 7132468 (+)
G175977 pacsin3 other upstream 2780100 4656605 ~ 4661136 (+)
ano1a ano1 other upstream 2796038 4613406 ~ 4645198 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other upstream 3141869 4281244 ~ 4299367 (+)
trnar-ucg_6 NA other downstream 801635 8243355 ~ 8243648 (+)
trnar-acg_6 NA other downstream 803232 8244952 ~ 8245024 (+)
trnar-ucg_8 NA other downstream 806296 8248016 ~ 8248088 (+)
LOC113536578 NA other downstream 811701 8253421 ~ 8270750 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other downstream 3368950 10810670 ~ 10850923 (+)

Expression


Co-expression Network