G177594


Basic Information

Item Value
gene id G177594
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7547366 ~ 7547831 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU210222
GAtgcatgaatatatatatatattatatattaaaaaaagaaaaaaaagaaagaaacaggaaaaagaaactCACGTAAACTTTTTCAAAGCTGTCCTGGAAGAAGAGCACAGCTCGGTCTAAGTGGACTTGCTGAGTCTCGTCATTTCCGGACTGCAGAGTCTGATCTCCAAACTGAGCTCCGTAGTCGAACAGGTCGCTTCGGCTCGCGCAGTTTACCGACACCGAGCCCGCGATAAACAGCAGCTTCAGCCCGAGCCACACCGCGCGCGCACAGGACGCCATCGCTacaactctacacacacactcacgcatgtacacatacacccacaccgACCCGCGCGCTCAGCTTTTCTCCTAACGGA

Function

GO: NA

KEGG:

id description
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

RNA

RNA id representative length rna type GC content exon number start site end site
TU210222 True 363 lncRNA 0.49 2 7547366 7547831

Neighbor

gene id symbol gene type direction distance location
tbce tbce coding upstream 33577 7501078 ~ 7513789 (+)
tomm20b tomm20,tomm20b,LOC107740066,LOC107701232,LOC107661159,LOC100703030,LOC108247505 coding upstream 55123 7484243 ~ 7492243 (+)
map1lc3c map1lc3c,LOC107702025 coding upstream 185436 7356919 ~ 7361930 (+)
opn6a LOC108271086 coding upstream 257849 7282097 ~ 7289517 (+)
eif4a3 eif4a3 coding upstream 267984 7272843 ~ 7279382 (+)
gpr137bb gpr137b,LOC107558369,LOC107703026,LOC105890320,LOC106564834 coding downstream 5142 7552973 ~ 7561495 (+)
trnae-cuc_24 NA coding downstream 54395 7602226 ~ 7602297 (+)
si:ch211-106j24.1 LOC101154672,LOC108428483 coding downstream 233830 7781661 ~ 7794628 (+)
LOC113536658 akap13 coding downstream 296842 7844673 ~ 7925739 (+)
mrps11 mrps11,LOC107594750 coding downstream 633167 8180998 ~ 8197691 (+)
G177580 NA non-coding upstream 30475 7514816 ~ 7516891 (+)
G177520 NA non-coding upstream 88609 7458538 ~ 7458757 (+)
G177518 NA non-coding upstream 90761 7455553 ~ 7456605 (+)
G177517 NA non-coding upstream 91896 7455242 ~ 7455470 (+)
G177513 NA non-coding upstream 97689 7449476 ~ 7449677 (+)
G177630 NA non-coding downstream 125685 7673516 ~ 7674470 (+)
G177628 NA non-coding downstream 128034 7675865 ~ 7676699 (+)
G177751 NA non-coding downstream 268232 7816063 ~ 7816610 (+)
G177955 NA non-coding downstream 579751 8127582 ~ 8127971 (+)
G178001 NA non-coding downstream 666147 8213978 ~ 8214220 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other upstream 276046 7267831 ~ 7271320 (+)
LOC113536390 LOC108271079 other upstream 414898 7122385 ~ 7132468 (+)
G175977 pacsin3 other upstream 2886230 4656605 ~ 4661136 (+)
ano1a ano1 other upstream 2902168 4613406 ~ 4645198 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other upstream 3247999 4281244 ~ 4299367 (+)
trnar-ucg_6 NA other downstream 695524 8243355 ~ 8243648 (+)
trnar-acg_6 NA other downstream 697121 8244952 ~ 8245024 (+)
trnar-ucg_8 NA other downstream 700185 8248016 ~ 8248088 (+)
LOC113536578 NA other downstream 705590 8253421 ~ 8270750 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other downstream 3262839 10810670 ~ 10850923 (+)

Expression


Co-expression Network