G177691


Basic Information

Item Value
gene id G177691
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7551522 ~ 7551750 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU210347
CAGCAACTCATGATGGCAGGGTGGACCTGGAGGACTATGCTTCCTCTGTGTGTGGATACATCAGCAAATGTATTGATGATGTCACCATCACAAAGGAGATAACCATCCGTCCTAACCAGAAACCCTGGCTAAATGGAGAAGTGCGGTCCTTATTAAAGGTACGGGACTCAGCCTTCCAGTCTGGAGATCCAGTGGCACTGAGAGCAGCAAGGAGGAAACTGGATGCTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210347 True 229 lncRNA 0.50 1 7551522 7551750

Neighbor

gene id symbol gene type direction distance location
nid1a nid1 coding downstream 3702 7515247 ~ 7547820 (-)
rbm34 rbm34 coding downstream 50622 7492501 ~ 7500900 (-)
irf2bp2b irf2bp2 coding downstream 114032 7434319 ~ 7437490 (-)
strn strn,LOC108271087,LOC108430145,LOC107702041,LOC107701064 coding downstream 197192 7296707 ~ 7354330 (-)
cfap410 c10h21orf2,cunh21orf2,LOC107713232,LOC107564578 coding downstream 298929 7248348 ~ 7252593 (-)
ero1b ero1b coding upstream 12630 7564380 ~ 7577840 (-)
mctp2b LOC108271124,LOC108428479 coding upstream 43265 7595015 ~ 7623473 (-)
LOC113536417 LOC108271125 coding upstream 73746 7625496 ~ 7656954 (-)
lrrc28 lrrc28,LOC107662304,LOC107706938,LOC107690794 coding upstream 107296 7659046 ~ 7671661 (-)
mespaa mespbb,LOC108270617,LOC106024706 coding upstream 247915 7799665 ~ 7801552 (-)
G177682 NA non-coding downstream 42334 7508851 ~ 7509188 (-)
G177562 NA non-coding downstream 72134 7479158 ~ 7479388 (-)
G177559 NA non-coding downstream 80312 7470974 ~ 7471210 (-)
G177550 NA non-coding downstream 109127 7441891 ~ 7442395 (-)
G177547 NA non-coding downstream 111134 7440179 ~ 7440388 (-)
G177729 NA non-coding upstream 155761 7707511 ~ 7755018 (-)
G177733 NA non-coding upstream 177163 7728913 ~ 7750806 (-)
G177807 NA non-coding upstream 374543 7926293 ~ 7927058 (-)
LOC113536653 NA non-coding upstream 719357 8271107 ~ 8275360 (-)
G178057 NA non-coding upstream 771869 8323619 ~ 8324164 (-)
si:dkey-56d12.4 LOC108270721 other downstream 67405 7480422 ~ 7484117 (-)
LOC113536608 LOC108270551 other downstream 690174 6856755 ~ 6861348 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other downstream 1843218 5696380 ~ 5708304 (-)
trip4 trip4 other downstream 2354704 5139610 ~ 5196818 (-)
G176307 NA other downstream 2470627 5079817 ~ 5080895 (-)
si:ch1073-365p7.2 NA other upstream 28684 7580434 ~ 7588815 (-)
igf1rb LOC108271091 other upstream 124166 7675916 ~ 7764430 (-)
trnar-ucg_7 NA other upstream 692899 8244649 ~ 8244721 (-)
trnar-acg_7 NA other upstream 694953 8246703 ~ 8246775 (-)
trnar-acg_8 NA other upstream 695940 8247690 ~ 8247762 (-)

Expression


Co-expression Network