G177729


Basic Information

Item Value
gene id G177729
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7707511 ~ 7755018 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU210390
AGCTACCtaccggggagggtgaaggctgacttctttcattttattaataggTTCAAATTATGCCTTATTCCTTATTAACTTTCacacaacaattttttttttcatttggaatGTGACCATGTTTAAACTTCACATGCTTCACGGTGTTGATGCATCTCAGTGCTGTAGCTATCATGAGCTACTTGCATTACACACGTTGGTCGAGGTGAGATCTGGCTAGTTAGCATACACAGATGACTGACGACCGTTTCAGAATCAGCATCACAAGTACAAGTACAGCGCAAAGCCGTTATATAACTCTACTCCTTACTTACTGCAGTCACTGTGAGAACAGGAAAACgtaaggagagagaaaaacagatcaTACCTGAAAGGCGAGAATGTGCTACatgagaaacttttttttttttttttttttttaaa

Function

NR:

description
PREDICTED: interferon-induced protein 44-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210390 True 423 lncRNA 0.38 2 7707511 7755018

Neighbor

gene id symbol gene type direction distance location
lrrc28 lrrc28,LOC107662304,LOC107706938,LOC107690794 coding downstream 35850 7659046 ~ 7671661 (-)
LOC113536417 LOC108271125 coding downstream 50557 7625496 ~ 7656954 (-)
mctp2b LOC108271124,LOC108428479 coding downstream 84038 7595015 ~ 7623473 (-)
ero1b ero1b coding downstream 129671 7564380 ~ 7577840 (-)
nid1a nid1 coding downstream 159691 7515247 ~ 7547820 (-)
mespaa mespbb,LOC108270617,LOC106024706 coding upstream 44647 7799665 ~ 7801552 (-)
mespba LOC108270618,LOC107714027,LOC107654092,LOC107581863,LOC107706936,LOC107568918 coding upstream 54372 7809390 ~ 7810679 (-)
sv2ba sv2ba,LOC108270522,LOC108428484,LOC107674753,LOC107568919 coding upstream 63218 7818236 ~ 7845027 (-)
ntrk3b ntrk3,ntrk3b,LOC107733954 coding upstream 236986 7992004 ~ 8124785 (-)
mrpl46 mrpl46 coding upstream 418243 8173261 ~ 8180651 (-)
G177691 NA non-coding downstream 155761 7551522 ~ 7551750 (-)
G177682 NA non-coding downstream 198323 7508851 ~ 7509188 (-)
G177562 NA non-coding downstream 228123 7479158 ~ 7479388 (-)
G177559 NA non-coding downstream 236301 7470974 ~ 7471210 (-)
G177550 NA non-coding downstream 265116 7441891 ~ 7442395 (-)
G177807 NA non-coding upstream 171275 7926293 ~ 7927058 (-)
LOC113536653 NA non-coding upstream 516089 8271107 ~ 8275360 (-)
G178057 NA non-coding upstream 568601 8323619 ~ 8324164 (-)
G178208 NA non-coding upstream 766783 8521801 ~ 8522085 (-)
G178227 NA non-coding upstream 838168 8593186 ~ 8593405 (-)
si:ch1073-365p7.2 NA other downstream 118696 7580434 ~ 7588815 (-)
si:dkey-56d12.4 LOC108270721 other downstream 223394 7480422 ~ 7484117 (-)
LOC113536608 LOC108270551 other downstream 846163 6856755 ~ 6861348 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other downstream 1999207 5696380 ~ 5708304 (-)
trip4 trip4 other downstream 2510693 5139610 ~ 5196818 (-)
trnar-ucg_7 NA other upstream 489631 8244649 ~ 8244721 (-)
trnar-acg_7 NA other upstream 491685 8246703 ~ 8246775 (-)
trnar-acg_8 NA other upstream 492672 8247690 ~ 8247762 (-)
asb7 asb7,LOC107755647,LOC107662256,LOC107742335 other upstream 1228164 8983182 ~ 8995120 (-)
mthfs mthfs,LOC102796869 other upstream 1565948 9320966 ~ 9336186 (-)

Expression


Co-expression Network