G177807



Basic Information


Item Value
gene id G177807
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7926293 ~ 7927058 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU210491
ATGAAAACCAGGCCTACTCCATCTTAGACTGTGCATTTagataactaaattaaaaataagaaatgaataagaaataataagggATATACAAAATATGTAAGTATGTTATGTGTAGTAACAATACAGAGTGCAGTGTACAGAGTGTCAGTGGAGAGTGACGAGAGTCTTTATGGAGTGGATCTGAGGGATCTGAGTGATGGAGCTATCTGTATGGAGGAGTCTGATGGTctgagggaagaagctcctcctgagcCTCTCAGTTTTAGCCATCAAACAATGGAAGCACTTGCCTGATTGCAGCAGGCTGAACAGACAGTTACTGGGGCGGGTGGAGTCCTTGATGATTTTAGCAGCTCTGGTACTGTATCACCTGGTGTAGATGTCATGCAGAGAGGGGAGAGCAGACCTGGAGATGTGCTCAGCTAAGCGCACCACTCTCTGTGGGGCTTTGCGGTCCTGGGTTGAGCAGTTTCCATACCACGCAGAGATGCACTGAGTCAGCAAACTTTCTATAGCCCCAGTACAGAACATTTTCAGGATCACTGGAGAGACCCTGAATTTCCTCAGCAGTCTCAGATGGTACAACTGTTGTCTGGTTTTGTTCACCTGAGCTTGGATGTGATGACTCCAGGTCCATTCCCCTGAGATGTGTGCTCCAAGGGACCTGAGGCTGCTCACTCTCTCCACAGGGGTCCCACTGATCTGGAGTGGATGGTTTTGGACTTTAGTTGTTGTCGGAGATGAAGCCAATAACCACTGTGTCGTC

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU210491 True 766 lncRNA 0.47 1 7926293 7927058

Neighbor


gene id symbol gene type direction distance location
sv2ba sv2ba,LOC108270522,LOC108428484,LOC107674753,LOC107568919 coding downstream 81266 7818236 ~ 7845027 (-)
mespba LOC108270618,LOC107714027,LOC107654092,LOC107581863,LOC107706936,LOC107568918 coding downstream 115614 7809390 ~ 7810679 (-)
mespaa mespbb,LOC108270617,LOC106024706 coding downstream 124741 7799665 ~ 7801552 (-)
lrrc28 lrrc28,LOC107662304,LOC107706938,LOC107690794 coding downstream 254632 7659046 ~ 7671661 (-)
LOC113536417 LOC108271125 coding downstream 269339 7625496 ~ 7656954 (-)
ntrk3b ntrk3,ntrk3b,LOC107733954 coding upstream 64946 7992004 ~ 8124785 (-)
mrpl46 mrpl46 coding upstream 246203 8173261 ~ 8180651 (-)
trnar-acg_4 NA coding upstream 315048 8242106 ~ 8242178 (-)
trnar-acg_5 NA coding upstream 315673 8242731 ~ 8242803 (-)
LOC113536672 LOC108271109,LOC107733936,LOC107662287,LOC107594765,LOC107600722,LOC107685235 coding upstream 380221 8307279 ~ 8312494 (-)
G177729 NA non-coding downstream 171275 7707511 ~ 7755018 (-)
G177733 NA non-coding downstream 175487 7728913 ~ 7750806 (-)
G177691 NA non-coding downstream 374543 7551522 ~ 7551750 (-)
G177682 NA non-coding downstream 417105 7508851 ~ 7509188 (-)
G177562 NA non-coding downstream 446905 7479158 ~ 7479388 (-)
LOC113536653 NA non-coding upstream 344049 8271107 ~ 8275360 (-)
G178057 NA non-coding upstream 396561 8323619 ~ 8324164 (-)
G178208 NA non-coding upstream 594743 8521801 ~ 8522085 (-)
G178227 NA non-coding upstream 666128 8593186 ~ 8593405 (-)
G178398 NA non-coding upstream 784119 8711177 ~ 8712118 (-)
igf1rb LOC108271091 other downstream 161863 7675916 ~ 7764430 (-)
si:ch1073-365p7.2 NA other downstream 337478 7580434 ~ 7588815 (-)
si:dkey-56d12.4 LOC108270721 other downstream 442176 7480422 ~ 7484117 (-)
LOC113536608 LOC108270551 other downstream 1064945 6856755 ~ 6861348 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other downstream 2217989 5696380 ~ 5708304 (-)
trnar-ucg_7 NA other upstream 317591 8244649 ~ 8244721 (-)
trnar-acg_7 NA other upstream 319645 8246703 ~ 8246775 (-)
trnar-acg_8 NA other upstream 320632 8247690 ~ 8247762 (-)
asb7 asb7,LOC107755647,LOC107662256,LOC107742335 other upstream 1056124 8983182 ~ 8995120 (-)
mthfs mthfs,LOC102796869 other upstream 1393908 9320966 ~ 9336186 (-)

Expression



Co-expression Network