G177955


Basic Information

Item Value
gene id G177955
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8127582 ~ 8127971 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU210641
CATCATGTCCCctaaatattgtgtattgtatgcttgctatatttgaaataaaaataaaaatgaataaattaacaaatttaCCTTTAATCACATCTCaatatgcactatatggccaaaagtttgtagacacctgaccatccactgttttgtactttttgaacatcccattccagatttagtccccctttgttgttataataacctccactcttctgggaaggctttccactagattttggagcgtggctgtgaggatttgtgctcattcagccacaagagcattagtcaTGTcgggtactgatgttgggtgaggacaTCTAGGGCGCAGACTGCATTCTAGTTCATCCCAGTGGTGTTCATTATggttgaggttagggctctgtgcaggac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210641 True 390 lncRNA 0.40 1 8127582 8127971

Neighbor

gene id symbol gene type direction distance location
LOC113536658 akap13 coding upstream 201843 7844673 ~ 7925739 (+)
si:ch211-106j24.1 LOC101154672,LOC108428483 coding upstream 332954 7781661 ~ 7794628 (+)
trnae-cuc_24 NA coding upstream 525285 7602226 ~ 7602297 (+)
gpr137bb gpr137b,LOC107558369,LOC107703026,LOC105890320,LOC106564834 coding upstream 566087 7552973 ~ 7561495 (+)
tbce tbce coding upstream 613793 7501078 ~ 7513789 (+)
mrps11 mrps11,LOC107594750 coding downstream 53027 8180998 ~ 8197691 (+)
kif7 kif7,LOC107733953,LOC107749689 coding downstream 91915 8219886 ~ 8242125 (+)
slc39a1 LOC108270705 coding downstream 344500 8472471 ~ 8477439 (+)
rlbp1a rlbp1,rlbp1a,LOC107737004,LOC107685234,LOC107600717 coding downstream 352885 8480856 ~ 8487330 (+)
kbtbd13 kbtbd13 coding downstream 404264 8532235 ~ 8534139 (+)
G177751 NA non-coding upstream 310972 7816063 ~ 7816610 (+)
G177628 NA non-coding upstream 450883 7675865 ~ 7676699 (+)
G177630 NA non-coding upstream 453112 7673516 ~ 7674470 (+)
G177594 NA non-coding upstream 579751 7547366 ~ 7547831 (+)
G177580 NA non-coding upstream 610691 7514816 ~ 7516891 (+)
G178001 NA non-coding downstream 86007 8213978 ~ 8214220 (+)
G178039 NA non-coding downstream 161552 8289523 ~ 8290715 (+)
G178047 NA non-coding downstream 179336 8307307 ~ 8309518 (+)
G178046 NA non-coding downstream 182689 8310660 ~ 8312652 (+)
G178067 NA non-coding downstream 280038 8408009 ~ 8441217 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other upstream 856262 7267831 ~ 7271320 (+)
LOC113536390 LOC108271079 other upstream 995114 7122385 ~ 7132468 (+)
G175977 pacsin3 other upstream 3466446 4656605 ~ 4661136 (+)
ano1a ano1 other upstream 3482384 4613406 ~ 4645198 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other upstream 3828215 4281244 ~ 4299367 (+)
trnar-ucg_6 NA other downstream 115384 8243355 ~ 8243648 (+)
trnar-acg_6 NA other downstream 116981 8244952 ~ 8245024 (+)
trnar-ucg_8 NA other downstream 120045 8248016 ~ 8248088 (+)
LOC113536578 NA other downstream 125450 8253421 ~ 8270750 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other downstream 2682699 10810670 ~ 10850923 (+)

Expression


Co-expression Network