G178039


Basic Information

Item Value
gene id G178039
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8289523 ~ 8290715 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU210735
CTTTCTTCATGAAAGGCTTACGATTGGAGAATTCTTCAGAGAGCCACTCCAGAATGGTTAAGGAtcacctggagcctatcccagtggACTCAAGGCACAATGCAGAGGACATCCTGGatgggtgccaacccattgcagggtgCAAGTGCAGAAACACATTACGGACAACTTGGAAacaccaatcagcctacaatgcatgtctttggactgggggaggaaaccag

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase MARCH4-like

GO:

id name namespace
GO:0045202 synapse cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0005179 hormone activity molecular_function
GO:0030545 receptor regulator activity molecular_function
GO:0048018 receptor ligand activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04723 Retrograde endocannabinoid signaling
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU210735 True 224 lncRNA 0.50 2 8289523 8290715

Neighbor

gene id symbol gene type direction distance location
kif7 kif7,LOC107733953,LOC107749689 coding upstream 47398 8219886 ~ 8242125 (+)
mrps11 mrps11,LOC107594750 coding upstream 91832 8180998 ~ 8197691 (+)
LOC113536658 akap13 coding upstream 363784 7844673 ~ 7925739 (+)
si:ch211-106j24.1 LOC101154672,LOC108428483 coding upstream 494895 7781661 ~ 7794628 (+)
trnae-cuc_24 NA coding upstream 687226 7602226 ~ 7602297 (+)
slc39a1 LOC108270705 coding downstream 181756 8472471 ~ 8477439 (+)
rlbp1a rlbp1,rlbp1a,LOC107737004,LOC107685234,LOC107600717 coding downstream 190141 8480856 ~ 8487330 (+)
kbtbd13 kbtbd13 coding downstream 241520 8532235 ~ 8534139 (+)
spg21 spg21,LOC107685233,LOC107600714,LOC107594761 coding downstream 274565 8565280 ~ 8571168 (+)
pcsk6 pcsk6,LOC107662249,LOC107742302 coding downstream 341108 8631823 ~ 8701565 (+)
G178001 NA non-coding upstream 75303 8213978 ~ 8214220 (+)
G177955 NA non-coding upstream 161552 8127582 ~ 8127971 (+)
G177751 NA non-coding upstream 472913 7816063 ~ 7816610 (+)
G177628 NA non-coding upstream 612824 7675865 ~ 7676699 (+)
G177630 NA non-coding upstream 615053 7673516 ~ 7674470 (+)
G178047 NA non-coding downstream 16592 8307307 ~ 8309518 (+)
G178046 NA non-coding downstream 19945 8310660 ~ 8312652 (+)
G178067 NA non-coding downstream 117294 8408009 ~ 8441217 (+)
G178104 NA non-coding downstream 129472 8420187 ~ 8422600 (+)
LOC113536702 LOC108271401 non-coding downstream 223416 8514131 ~ 8522122 (+)
LOC113536578 NA other upstream 18773 8253421 ~ 8270750 (+)
trnar-ucg_8 NA other upstream 41435 8248016 ~ 8248088 (+)
trnar-acg_6 NA other upstream 44499 8244952 ~ 8245024 (+)
trnar-ucg_6 NA other upstream 45875 8243355 ~ 8243648 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other upstream 1018203 7267831 ~ 7271320 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other downstream 2519955 10810670 ~ 10850923 (+)
G179632 NA other downstream 2805438 11096153 ~ 11098811 (+)
G179643 NA other downstream 2869631 11160346 ~ 11161597 (+)
G179758 psmd1 other downstream 3137898 11428613 ~ 11430897 (+)
G180121 NA other downstream 3764243 12054958 ~ 12055749 (+)

Expression


Co-expression Network