G178046


Basic Information

Item Value
gene id G178046
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8310660 ~ 8312652 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU210742
TCTAATTTGCCCTTCTTGGCAGAAAGGCTGGATATGGCGAAGGTGGAGAGGACGCTGGATGCCAGGGCCAGGTATGTGTTGATGGCAGCTCGGTGTTGCCCATCTCCATGAGGTGAAATGGCAGAGTTGAAACTGGGCCAGTACATCCAGAGGAAGAGACAGCCTGGAGCAAAAGAAGACTTTAGTCTTTGGTATCAGATCTTATGCTTATAAAAATTCTGTGTTTGGAAATGAATATTTTCTCACCAATCATAGCAAAGACATCAGAGTGGTAAACGGATCCATTGAGACGTTTGCTCTGGTTTAAGTGTGGTCGATAGAGCACCCACGATATTGTCAGACCATAATATCCTCCAAATGTGTGGATGACCATGGAGCCACCAGCATCTTTGACCTGTAGCAATGTTACAATCAGATAACCATAATCAATAGAATTTCTAGAACAGATTTGATCGAATATATAGATTGTGGTTTCACCACATATACATGAAATTATATGTCCAGTTTTATAATTGACTACCAGTGGCACATACATGCAAAACTTCAAGGATGATGTACTCTTCTACTGCAAATAAGGTGATTCCGAACAGAGTTAACACCATCAGCTGTACAGGACTGACTTTTCCCAAACAAGCTCCATATGCGATTAGGCACCCCGCCACACAGAAGTCAGCATTGATAATATTCTACTCCGATCTTTATTTTGCCATCTGTATGGTCCAGCGAGTGGAACCAGCCTTGCATCAGCAGGGCCCACTGCAGCCCAAATGAAGCAATAAGGAAGTTGAAGCCCACTCCACCAAAGCTGTAGCGCTTCAAAAAAGTCATGAGGAAGCCAAAACCCACAAAGATCATGACGTGCACATCTTGGAAACCTGTCCGACAAgcaaaagagggagaaaaaaaccgGTGGACATATTAGAGAAGATCATTTAATCATTTGTCATATTCAGCTTATTGGTTCACAGCCAACAGCCTCACTTAAAGAATTAcagcatatttattattacgATTATTTACGATTCCTTTACCGTTCATTTACAAGGTTAGAATAAAATTAACTGCAGTTCAGCCTTTAAATTTGATTGCAGAATCAATGAGACAACATTAAATATCAGTTGAGAAATCAGTTGATCTACATAAAGTAATGTTTAAGTGTAATATTACCACAGAGCtgagaataaaacagtttatcAGTCTCTGGGTAGATTAATACCTGGTCACAAgtatttcatttccttttgtaTACAATATTAGATAGAAGAGTAGAAAGAAGAATGCTGTTAACATCATTACAATATAATAGATACTATTTGGTATCTAAAACAAAATTTCTTAAATTGTCAATTAATGAATTATCTGTAAGAATAAATCCATACTCACTTGGATATCTGTAGTAGAAATCATTTTCGATATCACTTGTAATATTATGCTCCTTCTTATATTCAGACCAGTGAGCATCAGACTCTTCATCATAACGCACAAAGACTCCAAAGAGAATGATCATAGCAGTTTGccaaacaaagcaaacaacTGGCAGGCTGAGCCGGATATCTGTGTTTTTAGGATGGTTCCAGATCGTTTGGCAACAGTTTCCCATCGTGACTGTAACTGATATCCAAAAACAGGATACGTTTCAAGCAGGAGTTTGTGTAAAGAGTCGCTGTGCGCAGAGATATTTATAGCTGAATTTTTACAGGTGTGTCTCATCTGGACACCTGTTTGGCTGTTTCAAGTGCATCTTTTGCATgtgacacagaaaaaaaaactagtcaGCAGACATTGTTTCTGATGAATATCTGAAAGGCACGAGTGATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210742 True 1818 lncRNA 0.39 3 8310660 8312652

Neighbor

gene id symbol gene type direction distance location
kif7 kif7,LOC107733953,LOC107749689 coding upstream 68535 8219886 ~ 8242125 (+)
mrps11 mrps11,LOC107594750 coding upstream 112969 8180998 ~ 8197691 (+)
LOC113536658 akap13 coding upstream 384921 7844673 ~ 7925739 (+)
si:ch211-106j24.1 LOC101154672,LOC108428483 coding upstream 516032 7781661 ~ 7794628 (+)
trnae-cuc_24 NA coding upstream 708363 7602226 ~ 7602297 (+)
slc39a1 LOC108270705 coding downstream 159819 8472471 ~ 8477439 (+)
rlbp1a rlbp1,rlbp1a,LOC107737004,LOC107685234,LOC107600717 coding downstream 168204 8480856 ~ 8487330 (+)
kbtbd13 kbtbd13 coding downstream 219583 8532235 ~ 8534139 (+)
spg21 spg21,LOC107685233,LOC107600714,LOC107594761 coding downstream 252628 8565280 ~ 8571168 (+)
pcsk6 pcsk6,LOC107662249,LOC107742302 coding downstream 319171 8631823 ~ 8701565 (+)
G178047 NA non-coding upstream 1142 8307307 ~ 8309518 (+)
G178039 NA non-coding upstream 19945 8289523 ~ 8290715 (+)
G178001 NA non-coding upstream 96440 8213978 ~ 8214220 (+)
G177955 NA non-coding upstream 182689 8127582 ~ 8127971 (+)
G177751 NA non-coding upstream 494050 7816063 ~ 7816610 (+)
G178067 NA non-coding downstream 95357 8408009 ~ 8441217 (+)
G178104 NA non-coding downstream 107535 8420187 ~ 8422600 (+)
LOC113536702 LOC108271401 non-coding downstream 201479 8514131 ~ 8522122 (+)
G178170 NA non-coding downstream 231617 8544269 ~ 8544475 (+)
G178192 NA non-coding downstream 276168 8588820 ~ 8589555 (+)
LOC113536578 NA other upstream 39910 8253421 ~ 8270750 (+)
trnar-ucg_8 NA other upstream 62572 8248016 ~ 8248088 (+)
trnar-acg_6 NA other upstream 65636 8244952 ~ 8245024 (+)
trnar-ucg_6 NA other upstream 67012 8243355 ~ 8243648 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other upstream 1039340 7267831 ~ 7271320 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other downstream 2498018 10810670 ~ 10850923 (+)
G179632 NA other downstream 2783501 11096153 ~ 11098811 (+)
G179643 NA other downstream 2847694 11160346 ~ 11161597 (+)
G179758 psmd1 other downstream 3115961 11428613 ~ 11430897 (+)
G180121 NA other downstream 3742306 12054958 ~ 12055749 (+)

Expression


Co-expression Network