G178067


Basic Information

Item Value
gene id G178067
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8408009 ~ 8441217 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU210770
tcaaataatcactctttaaaaCAGTGgtgggcagaaaagcatctcagcatgcacaaaacattgaaccttgagttGAATgagctataacagcagaagaccacatcaggttccactcagGTTCACCCAAAccggacagctgaagattagaaaactAATCCCCTGGTGTTTccccagtcttcaactgtccagtttcagtgagcctgtgcccatgacagcctcagattcttgtttttggctgacaggagtggaacctgacgtggtcttccgctgttgtagcccattcacctcaagTTTTGATGTGATGCGTCTTCTTAGATGGTTTTCTGCTCTCCAaagttgtaaagagtgaataTTTAAGTTACTATAGACAATATGTTGGCCAACAAACCCAAGGAAACTTGTCTGATATCCCCAAAACACTCTCTTACCTCTTCTAGTCTGACTTGAACTGTGGCAATATTAAATTTTAACTAAATTATCCACACAGTGAAAAAATATACAATCGGTAACTCATATTGTACAGATTAAACGCTAATTTTCAGTGCATTGGCttgaaaaatcataaaaatgtctGGAAGCGGTGTGGAACATTTCTCGCATACCTGGGGTTCTCTGTGCAGGCGAATGTGTGTATTGCCGTGGTTAATGAAACCGTGCTTTCGGGCAATGCGGTTggcttcctcctctcctccggGGATATGGACGGcccatgtgtttgtgtaaaccTTTTGGGCAAGGGACGGTGTGACCTCGGAGGTCAGGAGGGTCAGCAGCGTGACAAGCGGCAAGCAGGCCAGGCACAGCTCCATCAGAGAGGGTGGAGGTCACAGAAACCTCAGGTCTTCAAGTCCCTCAAAATGTGCACATGAAGTGGATGCAGCAAAGCTTTCAAATCACCTGGGGAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210770 True 907 lncRNA 0.46 2 8408009 8441217

Neighbor

gene id symbol gene type direction distance location
kif7 kif7,LOC107733953,LOC107749689 coding upstream 165884 8219886 ~ 8242125 (+)
mrps11 mrps11,LOC107594750 coding upstream 210318 8180998 ~ 8197691 (+)
LOC113536658 akap13 coding upstream 482270 7844673 ~ 7925739 (+)
si:ch211-106j24.1 LOC101154672,LOC108428483 coding upstream 613381 7781661 ~ 7794628 (+)
trnae-cuc_24 NA coding upstream 805712 7602226 ~ 7602297 (+)
slc39a1 LOC108270705 coding downstream 31254 8472471 ~ 8477439 (+)
rlbp1a rlbp1,rlbp1a,LOC107737004,LOC107685234,LOC107600717 coding downstream 39639 8480856 ~ 8487330 (+)
kbtbd13 kbtbd13 coding downstream 91018 8532235 ~ 8534139 (+)
spg21 spg21,LOC107685233,LOC107600714,LOC107594761 coding downstream 124063 8565280 ~ 8571168 (+)
pcsk6 pcsk6,LOC107662249,LOC107742302 coding downstream 190606 8631823 ~ 8701565 (+)
G178046 NA non-coding upstream 95357 8310660 ~ 8312652 (+)
G178047 NA non-coding upstream 98491 8307307 ~ 8309518 (+)
G178039 NA non-coding upstream 117294 8289523 ~ 8290715 (+)
G178001 NA non-coding upstream 193789 8213978 ~ 8214220 (+)
G177955 NA non-coding upstream 280038 8127582 ~ 8127971 (+)
LOC113536702 LOC108271401 non-coding downstream 72914 8514131 ~ 8522122 (+)
G178170 NA non-coding downstream 103052 8544269 ~ 8544475 (+)
G178192 NA non-coding downstream 147603 8588820 ~ 8589555 (+)
G178260 NA non-coding downstream 366388 8807605 ~ 8808944 (+)
G178383 NA non-coding downstream 541748 8982965 ~ 8984242 (+)
LOC113536578 NA other upstream 137259 8253421 ~ 8270750 (+)
trnar-ucg_8 NA other upstream 159921 8248016 ~ 8248088 (+)
trnar-acg_6 NA other upstream 162985 8244952 ~ 8245024 (+)
trnar-ucg_6 NA other upstream 164361 8243355 ~ 8243648 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other upstream 1136689 7267831 ~ 7271320 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other downstream 2369453 10810670 ~ 10850923 (+)
G179632 NA other downstream 2654936 11096153 ~ 11098811 (+)
G179643 NA other downstream 2719129 11160346 ~ 11161597 (+)
G179758 psmd1 other downstream 2987396 11428613 ~ 11430897 (+)
G180121 NA other downstream 3613741 12054958 ~ 12055749 (+)

Expression


Co-expression Network