G178170


Basic Information

Item Value
gene id G178170
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8544269 ~ 8544475 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU210887
TTAGAAATGCTTTTGTGGACAGTTTCCTCATGAAAGATCTGGACTGGGGAACTGTTGTTCATGATCTTTGTACAAATGGCAGCTTATATCTGGATGGACAGTTGGCTTTTACTGCCTAGTGATCTAGTATAACTACAAACAACATGATCATGGCCGGCAAAGCCTTGTTACAAAGCCCATGGGAGAATACTAGGAAATCTGTTCAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210887 True 207 lncRNA 0.42 1 8544269 8544475

Neighbor

gene id symbol gene type direction distance location
kbtbd13 kbtbd13 coding upstream 10130 8532235 ~ 8534139 (+)
rlbp1a rlbp1,rlbp1a,LOC107737004,LOC107685234,LOC107600717 coding upstream 56939 8480856 ~ 8487330 (+)
slc39a1 LOC108270705 coding upstream 66830 8472471 ~ 8477439 (+)
kif7 kif7,LOC107733953,LOC107749689 coding upstream 302144 8219886 ~ 8242125 (+)
mrps11 mrps11,LOC107594750 coding upstream 346578 8180998 ~ 8197691 (+)
spg21 spg21,LOC107685233,LOC107600714,LOC107594761 coding downstream 20805 8565280 ~ 8571168 (+)
pcsk6 pcsk6,LOC107662249,LOC107742302 coding downstream 87348 8631823 ~ 8701565 (+)
snrpa1 snrpa1 coding downstream 166680 8711155 ~ 8717829 (+)
selenos selenos coding downstream 174052 8718527 ~ 8724082 (+)
chsy1 chsy1,LOC107662251,LOC107755644,LOC107742304 coding downstream 183245 8727720 ~ 8782842 (+)
LOC113536702 LOC108271401 non-coding upstream 22147 8514131 ~ 8522122 (+)
G178067 NA non-coding upstream 103052 8408009 ~ 8441217 (+)
G178104 NA non-coding upstream 121669 8420187 ~ 8422600 (+)
G178046 NA non-coding upstream 231617 8310660 ~ 8312652 (+)
G178047 NA non-coding upstream 234751 8307307 ~ 8309518 (+)
G178192 NA non-coding downstream 44345 8588820 ~ 8589555 (+)
G178260 NA non-coding downstream 263130 8807605 ~ 8808944 (+)
G178383 NA non-coding downstream 438490 8982965 ~ 8984242 (+)
G178539 NA non-coding downstream 660982 9205457 ~ 9205678 (+)
G178740 NA non-coding downstream 733130 9277605 ~ 9277816 (+)
LOC113536578 NA other upstream 273519 8253421 ~ 8270750 (+)
trnar-ucg_8 NA other upstream 296181 8248016 ~ 8248088 (+)
trnar-acg_6 NA other upstream 299245 8244952 ~ 8245024 (+)
trnar-ucg_6 NA other upstream 300621 8243355 ~ 8243648 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other upstream 1272949 7267831 ~ 7271320 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other downstream 2266195 10810670 ~ 10850923 (+)
G179632 NA other downstream 2551678 11096153 ~ 11098811 (+)
G179643 NA other downstream 2615871 11160346 ~ 11161597 (+)
G179758 psmd1 other downstream 2884138 11428613 ~ 11430897 (+)
G180121 NA other downstream 3510483 12054958 ~ 12055749 (+)

Expression


Co-expression Network