G178208


Basic Information

Item Value
gene id G178208
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8521801 ~ 8522085 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU210939
TCACATGTATTTACAAGATGGCAGGAAGATGTGTCccaaaattaaatctaatttcatctgttttttcaCATCATAACAAATAATTCACACTATCTATCATTAATGGTTAGTATAATTTTTGGACATATTTGCATTACGTTATTGTTAATGTCAGTCTCAGTGCTGGAATATTCCTGCACAGCATAGTCCAGTGCTTTCCCTGGTGCATTTCACCAGATTTAACTTGTTTAACCGACTCATCCCAAGCCCTGTTCTTTGTCTTTATCCACCATTATCTTAATCAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210939 True 285 lncRNA 0.35 1 8521801 8522085

Neighbor

gene id symbol gene type direction distance location
abhd2a abhd2a,LOC108270704,LOC108428500,LOC107733946,LOC107685211,LOC107662289,LOC107737001 coding downstream 13471 8491252 ~ 8508330 (-)
LOC113536763 LOC108270703 coding downstream 52369 8453004 ~ 8469432 (-)
furina furina,LOC108270701,LOC108428498,LOC107737005,LOC107733942,LOC107685214,LOC107662279 coding downstream 70549 8373495 ~ 8451252 (-)
fes fes,LOC107733944,LOC107685217,LOC107600721,LOC107594730 coding downstream 154814 8330088 ~ 8366987 (-)
LOC113536672 LOC108271109,LOC107733936,LOC107662287,LOC107594765,LOC107600722,LOC107685235 coding downstream 209307 8307279 ~ 8312494 (-)
rasl12 rasl12,LOC107600716,LOC107737003,LOC107685213 coding upstream 523 8522608 ~ 8529443 (-)
ubap1lb ubap1l coding upstream 12883 8534968 ~ 8543975 (-)
pdcd7 pdcd7 coding upstream 22857 8544942 ~ 8549611 (-)
clpxa clpx,clpxa,LOC107733949,LOC107737000,LOC107594724,LOC107600713 coding upstream 28283 8550368 ~ 8564908 (-)
ankdd1a ankdd1a coding upstream 50390 8572475 ~ 8589352 (-)
G178057 NA non-coding downstream 197637 8323619 ~ 8324164 (-)
LOC113536653 NA non-coding downstream 246441 8271107 ~ 8275360 (-)
G177807 NA non-coding downstream 594743 7926293 ~ 7927058 (-)
G177729 NA non-coding downstream 766783 7707511 ~ 7755018 (-)
G177733 NA non-coding downstream 770995 7728913 ~ 7750806 (-)
G178227 NA non-coding upstream 71101 8593186 ~ 8593405 (-)
G178398 NA non-coding upstream 189092 8711177 ~ 8712118 (-)
G178501 NA non-coding upstream 481559 9003644 ~ 9003852 (-)
G178673 NA non-coding upstream 664986 9187071 ~ 9189914 (-)
G178679 NA non-coding upstream 675515 9197600 ~ 9197805 (-)
trnar-acg_8 NA other downstream 274039 8247690 ~ 8247762 (-)
trnar-acg_7 NA other downstream 275026 8246703 ~ 8246775 (-)
trnar-ucg_7 NA other downstream 277080 8244649 ~ 8244721 (-)
igf1rb LOC108271091 other downstream 757371 7675916 ~ 7764430 (-)
si:ch1073-365p7.2 NA other downstream 932986 7580434 ~ 7588815 (-)
asb7 asb7,LOC107755647,LOC107662256,LOC107742335 other upstream 461097 8983182 ~ 8995120 (-)
mthfs mthfs,LOC102796869 other upstream 798881 9320966 ~ 9336186 (-)
LOC113536412 NA other upstream 865406 9387491 ~ 9407218 (-)
G178942 NA other upstream 1000331 9522416 ~ 9523330 (-)
G179035 NA other upstream 1291807 9813892 ~ 9815225 (-)

Expression


Co-expression Network