G178227


Basic Information

Item Value
gene id G178227
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8593186 ~ 8593405 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU210961
GGAGCTACAAGGTTAACATTCTTAACAAGGAATTGTACTAATAGACGTCCGCCTCACCTAAAATCTTTTCCTCAAAAACATACTTAAATCTACACGTACTCACTATAAGCAACATTGTTAAGCTGTTTAAGCTGATAAATAAACAATCTTGTAAAATATCAGGGAGAATCTGCATTTACTCAGTTAAGTTTGTAAGTCATCATTTATACCAATATCTGCA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005102 signaling receptor binding molecular_function
GO:0005179 hormone activity molecular_function
GO:0030545 receptor regulator activity molecular_function
GO:0048018 receptor ligand activity molecular_function
GO:0098772 molecular function regulator molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210961 True 220 lncRNA 0.33 1 8593186 8593405

Neighbor

gene id symbol gene type direction distance location
ankdd1a ankdd1a coding downstream 3834 8572475 ~ 8589352 (-)
clpxa clpx,clpxa,LOC107733949,LOC107737000,LOC107594724,LOC107600713 coding downstream 28278 8550368 ~ 8564908 (-)
pdcd7 pdcd7 coding downstream 43575 8544942 ~ 8549611 (-)
ubap1lb ubap1l coding downstream 49211 8534968 ~ 8543975 (-)
rasl12 rasl12,LOC107600716,LOC107737003,LOC107685213 coding downstream 63743 8522608 ~ 8529443 (-)
plekho2 plekho2 coding upstream 2775 8596180 ~ 8612306 (-)
lrrk1 lrrk1,LOC106593346,LOC106562602 coding upstream 214182 8807587 ~ 8924385 (-)
trnae-uuc_3 NA coding upstream 297222 8890627 ~ 8890698 (-)
aldh1a3 aldh1a3,LOC107692006,LOC107742307,LOC107553814,LOC106562593,LOC107755645,LOC107662254 coding upstream 333407 8926812 ~ 8950809 (-)
mesd mesdc2,LOC107591313,LOC107737020,LOC107693043,LOC107553745,LOC107709495 coding upstream 1165247 9758652 ~ 9768100 (-)
G178208 NA non-coding downstream 71101 8521801 ~ 8522085 (-)
G178057 NA non-coding downstream 269022 8323619 ~ 8324164 (-)
LOC113536653 NA non-coding downstream 317826 8271107 ~ 8275360 (-)
G177807 NA non-coding downstream 666128 7926293 ~ 7927058 (-)
G177729 NA non-coding downstream 838168 7707511 ~ 7755018 (-)
G178398 NA non-coding upstream 117772 8711177 ~ 8712118 (-)
G178501 NA non-coding upstream 410239 9003644 ~ 9003852 (-)
G178673 NA non-coding upstream 593666 9187071 ~ 9189914 (-)
G178679 NA non-coding upstream 604195 9197600 ~ 9197805 (-)
G178867 NA non-coding upstream 716819 9310224 ~ 9311903 (-)
trnar-acg_8 NA other downstream 345424 8247690 ~ 8247762 (-)
trnar-acg_7 NA other downstream 346411 8246703 ~ 8246775 (-)
trnar-ucg_7 NA other downstream 348465 8244649 ~ 8244721 (-)
igf1rb LOC108271091 other downstream 828756 7675916 ~ 7764430 (-)
si:ch1073-365p7.2 NA other downstream 1004371 7580434 ~ 7588815 (-)
asb7 asb7,LOC107755647,LOC107662256,LOC107742335 other upstream 389777 8983182 ~ 8995120 (-)
mthfs mthfs,LOC102796869 other upstream 727561 9320966 ~ 9336186 (-)
LOC113536412 NA other upstream 794086 9387491 ~ 9407218 (-)
G178942 NA other upstream 929011 9522416 ~ 9523330 (-)
G179035 NA other upstream 1220487 9813892 ~ 9815225 (-)

Expression


Co-expression Network