G178260


Basic Information

Item Value
gene id G178260
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8807605 ~ 8808944 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU210999
agttttattcaaatttacAATACAGTAACAATCTATTTACACATGCAGACATATAGACCATAATAAATATCATACAGTTAATTGTTTACAAAGTTctattacatatttacaatagTAAAAGCTAACATGCTGGTATTTCTGCTAGTGTAGAGGTATTTAAAGAATGTTCTGACAAAAGAATGTATGCAATTTTGTAATCCAAATGTAGTAAATCAGCTAAGTCATGTTTGGGGTTCAACAtttgcttttttcagttttgcactggagctccACTATAGCTatcttttctgtaaaatatatgCCATGTTCAAAGCTTTGCTTCAATAACAATGTCATTGTTAAGATACATAATTTCACTATGAGTAAAagattttgtaaaataacattTCAGGTGACAAACtaaataacactttatttatcccaaagCTCTGTTATGCTCTAGGGGTATTATTTTGGTGGCATGGTTTAGGCTGTCCCCCACTTGTCCTCTTAGAAGAAAGCGTAACTGCAAATCAGtgcaaagttcttctgactgctGCCTTTTATCCTATGATGTAACATTTCTATCGTgttgggagtggtctcttccaggatatcttcacccccatccacagggctaAAGAGCTCACTGAATGcttaatgaggatgaaaatgaagtATCATATGCTATAGCCTTCACACTCACCTAATCTCAACACAATTGTACACCTGTGGGAGATTTTCCTAGTGACGTGTTGGACAGCGCTCTTTACCACCATCTTCAAAACACCAGTTGAAgtaatatcttttggaagaatggtgttcttCCCCCTGCACACTTCCAAAGACTTGTAGAATCTCTGCCAAGGCACACCGAAACTGTTCTTGTGATTCATGATGGCCCAaaaccttactaagacactttatcttggtttttcctttaatttgtcaccagtCTTTATATTATCATCAACTTTCCAGTACAACTGCACCTTCAGACTCTGGAAGGCTGGACCCTAAGAGTTTAATCATACCAACCTGctccaaggaaaaaaaaaagtgatcctGGCTGTCTAGAATGAAAGTCGtactgtgtcccaaaccacgtCAACAAGTCTATGTGATATTACCTAAGAACTGCATGCGGTCTGATGGATGCTGCAAATATTTACTATGTGAAAAGATTTTGCGTAAGATGGATGTTCATTACGTCTTACCTACAATAGCCTCATTGCTCCTGTGCAAAtctaaaaaaagcaaatgttggACACTAATCACGTCTTGGTTGATcgactacatttggggtaagaagaaaaaaaactgcaaagttGATTTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210999 True 1316 lncRNA 0.37 2 8807605 8808944

Neighbor

gene id symbol gene type direction distance location
chsy1 chsy1,LOC107662251,LOC107755644,LOC107742304 coding upstream 24763 8727720 ~ 8782842 (+)
selenos selenos coding upstream 83523 8718527 ~ 8724082 (+)
snrpa1 snrpa1 coding upstream 89776 8711155 ~ 8717829 (+)
pcsk6 pcsk6,LOC107662249,LOC107742302 coding upstream 106040 8631823 ~ 8701565 (+)
spg21 spg21,LOC107685233,LOC107600714,LOC107594761 coding upstream 236437 8565280 ~ 8571168 (+)
lins1 lins1 coding downstream 186432 8995376 ~ 9001851 (+)
cers3a cers3,LOC107692405 coding downstream 198425 9007369 ~ 9035454 (+)
adamts17 adamts17,LOC107662259,LOC107692780,LOC107563246,LOC107742308,LOC107553817,LOC107719674 coding downstream 230266 9039210 ~ 9189919 (+)
minar1 kiaa1024,si:cabz01029535.1,LOC107719677,LOC107742309,LOC107662343,LOC107692337 coding downstream 417503 9226447 ~ 9257997 (+)
zfand6 zfand6 coding downstream 527703 9336647 ~ 9349909 (+)
G178192 NA non-coding upstream 218050 8588820 ~ 8589555 (+)
G178170 NA non-coding upstream 263130 8544269 ~ 8544475 (+)
LOC113536702 LOC108271401 non-coding upstream 285483 8514131 ~ 8522122 (+)
G178067 NA non-coding upstream 366388 8408009 ~ 8441217 (+)
G178104 NA non-coding upstream 385005 8420187 ~ 8422600 (+)
G178383 NA non-coding downstream 174021 8982965 ~ 8984242 (+)
G178539 NA non-coding downstream 396513 9205457 ~ 9205678 (+)
G178740 NA non-coding downstream 468661 9277605 ~ 9277816 (+)
G178741 NA non-coding downstream 468943 9277887 ~ 9278116 (+)
G178761 NA non-coding downstream 490442 9299386 ~ 9299657 (+)
LOC113536578 NA other upstream 536855 8253421 ~ 8270750 (+)
trnar-ucg_8 NA other upstream 559517 8248016 ~ 8248088 (+)
trnar-acg_6 NA other upstream 562581 8244952 ~ 8245024 (+)
trnar-ucg_6 NA other upstream 563957 8243355 ~ 8243648 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other upstream 1536285 7267831 ~ 7271320 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other downstream 2001726 10810670 ~ 10850923 (+)
G179632 NA other downstream 2287209 11096153 ~ 11098811 (+)
G179643 NA other downstream 2351402 11160346 ~ 11161597 (+)
G179758 psmd1 other downstream 2619669 11428613 ~ 11430897 (+)
G180121 NA other downstream 3246014 12054958 ~ 12055749 (+)

Expression


Co-expression Network