G178383


Basic Information

Item Value
gene id G178383
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8982965 ~ 8984242 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU211134
GGTTAGAGAACTCATACACAATTTATACTCTTCTGTAATTTTAGTATCACTAAGGCCAATATCAATAACAAATGATATATTGTGAAACCCTACCacctactgaaaaaaaataccTCAGCATACTGAGCagacttttattaaaatgtcagcAGTCAAAAATGGATGCAAATGAACAACCAGAACACAGATACtaatgcttaaaaaataaacaaggacATTGTGATAATCATTTATTCACACAATTCATTTTGGGCTAGGCAAACAGCAGTTTATATACATTCAGTAGTTGTTGTGGTGAACGGCGTGGAAGACGTCGAGACGATTTGAATCCGGAATAAGTGCTTTCTGAAAACACATCAGCGCTTCAaaaccaaatacacacacacacacacacacacacacacacacacacatactgtaaacAAAATTTCAGagaaaacactgctgttttttaAAGTGGAGTCGGACTTTACTGAAACTATGAAAACCTGAAGATACAGAAAAAGTCCAATTCTTCTTTATTCCTGGATTTAGATGCAGATGACCAGCTCACCTGTGCTTAAGTGAGGAAATTTCAGTTCAGCCCTGCAACATTGAAAGAATACAATAACCTCTATTTTAACAAATACACCGCCATTTTATTAGTGTGtagctgaataaaaataaacacatcatcCAGCCATATACACTTCACTTTAAATTTCCACATCCTTTGCCTAACCTTTCATCCTGATTTACAATCGTATCACCCTTTGAATTTGAAAGAACGTCCATGTTCAATGCTCCTTTAAATATGTCATCAATAAGGAGATTTATTAGGGACTGGCTTCCAAATAGATGAATGGACAACCTTGTGAAAAGAACTACAATAGTTTGACCTGTCAACAATATTAAtattgcacagtattgtataaCCAATTATAGGCATGTGCCTACTCAATACAGGTGGGACAATGCATACTTTTTAATCGGACTAAAGATgtaagaaatgaacaaaataaatacgTTACTAGATTATACTGGTGTTTCTTACAAAAACTAGTCAACTTAATTTAATAACAAGTAACACACCAGAGAAAATGTGCATGTTGTTGAGGAACCCAAGAATCCACCCAAGTGAAGGCACGACTAAATGCTGTGGGCCTTGAACAGTGAGcgtagaactttttttttttttttttttttgccatgtgcCAACTTCCAAAAAACTCTTAGATATAAATCTGATAGAGGGAAAAATTTTAACTATATTTCCACAATTTCACTAATTGCTCCCAA
>TU211135
TGCAACATTGAAAGAATACAATAACCTCTATTTTAACAAATACACCGCCATTTTATTAGTGTGtagctgaataaaaataaacacatcatcCAGCCATATACACTTCACTTTAAATTTCCACATCCTTTGCCTAACCTTTCATCCTGATTTACAATCGTATCACCCTTTGAATTTGAAAGAACGTCCATGTTCAATGCTCCTTTAAATATGTCATCAATAAGGAGATTTATTAGGGACTGGCTTCCAAATAGATGAATGGACAACCTTGTGAAAAGAACTACAATAGTTTGACCTGTCAACAATATTAAtattgcacagtattgtataaCCAATTATAGGCATGTGCCTACTCAATACAGGTGGGACAATGCATACTTTTTAATCGGACTAAAGATgtaagaaatgaacaaaataaatacgTTACTAGATTATACTGGTGTTTCTTACAAAAACTAGTCAACTTAATTTAATAACAAGTAACACACCAGAGAAAATGTGCATGTTGTTGAGGAACCCAAGAATCCACCCAAGTGAAGGCACGACTAAATGCTGTGGGCCTTGAACAGTGAGcgtagaactttttttttttttttttttttgccatgtgcCAACTTCCAAAAAACTCTTAGATATAAATCTGATAGAGGGAAAAATTTTAACTATATTTCCACAATTTCACTAATTGCTCCCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU211134 True 1278 lncRNA 0.35 1 8982965 8984242
TU211135 False 692 lncRNA 0.33 1 8983551 8984242

Neighbor

gene id symbol gene type direction distance location
chsy1 chsy1,LOC107662251,LOC107755644,LOC107742304 coding upstream 200123 8727720 ~ 8782842 (+)
selenos selenos coding upstream 258883 8718527 ~ 8724082 (+)
snrpa1 snrpa1 coding upstream 265136 8711155 ~ 8717829 (+)
pcsk6 pcsk6,LOC107662249,LOC107742302 coding upstream 281400 8631823 ~ 8701565 (+)
spg21 spg21,LOC107685233,LOC107600714,LOC107594761 coding upstream 411797 8565280 ~ 8571168 (+)
lins1 lins1 coding downstream 11134 8995376 ~ 9001851 (+)
cers3a cers3,LOC107692405 coding downstream 23127 9007369 ~ 9035454 (+)
adamts17 adamts17,LOC107662259,LOC107692780,LOC107563246,LOC107742308,LOC107553817,LOC107719674 coding downstream 54968 9039210 ~ 9189919 (+)
minar1 kiaa1024,si:cabz01029535.1,LOC107719677,LOC107742309,LOC107662343,LOC107692337 coding downstream 242205 9226447 ~ 9257997 (+)
zfand6 zfand6 coding downstream 352405 9336647 ~ 9349909 (+)
G178260 NA non-coding upstream 174021 8807605 ~ 8808944 (+)
G178192 NA non-coding upstream 393410 8588820 ~ 8589555 (+)
G178170 NA non-coding upstream 438490 8544269 ~ 8544475 (+)
LOC113536702 LOC108271401 non-coding upstream 460843 8514131 ~ 8522122 (+)
G178067 NA non-coding upstream 541748 8408009 ~ 8441217 (+)
G178539 NA non-coding downstream 221215 9205457 ~ 9205678 (+)
G178740 NA non-coding downstream 293363 9277605 ~ 9277816 (+)
G178741 NA non-coding downstream 293645 9277887 ~ 9278116 (+)
G178761 NA non-coding downstream 315144 9299386 ~ 9299657 (+)
G178760 NA non-coding downstream 316752 9300994 ~ 9301338 (+)
LOC113536578 NA other upstream 712215 8253421 ~ 8270750 (+)
trnar-ucg_8 NA other upstream 734877 8248016 ~ 8248088 (+)
trnar-acg_6 NA other upstream 737941 8244952 ~ 8245024 (+)
trnar-ucg_6 NA other upstream 739317 8243355 ~ 8243648 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other upstream 1711645 7267831 ~ 7271320 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other downstream 1826428 10810670 ~ 10850923 (+)
G179632 NA other downstream 2111911 11096153 ~ 11098811 (+)
G179643 NA other downstream 2176104 11160346 ~ 11161597 (+)
G179758 psmd1 other downstream 2444371 11428613 ~ 11430897 (+)
G180121 NA other downstream 3070716 12054958 ~ 12055749 (+)

Expression


Co-expression Network