G178398


Basic Information

Item Value
gene id G178398
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8711177 ~ 8712118 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU211159
GAccataacaacaaatcattggtcagaacatgagcaggaatgaaacaaaCACACTCCTGAGAGCCCCTGTGCCTCCACTTACTGCTTTACTTTCAATGCAGtcaactgtttggggaaaagctagaaacaaagaaattcacttatatagtttaatcataatgattaaaatatttgatgtaaaattcaaactaacacatgtctgggtgtacaaaactttccaaaaatatcttctgggatttttttttccttaaaagattagtcattatttggttatctgccacaaggcttaaacatttaaagaaatcagagGGAAAAGCTATtacatactaacttcctttatctattcgTTTAATTCTTGCTTATTtcttgaccaatgatttgttgttaagaccattaaaagattaatatttggacttggatcattttatttatttatattgctcAGGAGTGTAGTGTAGCTCATACAGCAGAATCTCCAAAACCCACTCACTACTTATGCAAGTATTAGCCACTGAATCCTAAATGACTCATTGTTCCCTACATAAACGCACTACTGAGATTATAAAATAGTAGCttctacaccctatgtagtgcacttcattAACAATTATAAGCAGTTGCAAATTTAGCCGCCGTTATGCTAACTCTGCTGCTAACTCTGTTGCTAACTCTGTTGCTAAGTTCGCTTTAGCTACATCACCTCGGAGATCCAGTTCTCTGTCTCGGACTGGATTAGTGTACTGAGCAGCTTGCTCCACTAACTCTGCCGACAGTTTCACCATGTCGACGAAACCAAAATAAAAGCCAAAACAAATATATTCCAAATAGCTCACGTCCCGTTAGAGCAGAAGAACAAATGCTAACGTCTACCACACGCTACCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU211159 True 882 lncRNA 0.37 3 8711177 8712118

Neighbor

gene id symbol gene type direction distance location
plekho2 plekho2 coding downstream 98871 8596180 ~ 8612306 (-)
ankdd1a ankdd1a coding downstream 121825 8572475 ~ 8589352 (-)
clpxa clpx,clpxa,LOC107733949,LOC107737000,LOC107594724,LOC107600713 coding downstream 146269 8550368 ~ 8564908 (-)
pdcd7 pdcd7 coding downstream 161566 8544942 ~ 8549611 (-)
ubap1lb ubap1l coding downstream 167202 8534968 ~ 8543975 (-)
lrrk1 lrrk1,LOC106593346,LOC106562602 coding upstream 95469 8807587 ~ 8924385 (-)
trnae-uuc_3 NA coding upstream 178509 8890627 ~ 8890698 (-)
aldh1a3 aldh1a3,LOC107692006,LOC107742307,LOC107553814,LOC106562593,LOC107755645,LOC107662254 coding upstream 214694 8926812 ~ 8950809 (-)
mesd mesdc2,LOC107591313,LOC107737020,LOC107693043,LOC107553745,LOC107709495 coding upstream 1046534 9758652 ~ 9768100 (-)
stard5 stard5,star5,LOC107691451,LOC107709494 coding upstream 1115830 9827948 ~ 9835960 (-)
G178227 NA non-coding downstream 117772 8593186 ~ 8593405 (-)
G178208 NA non-coding downstream 189092 8521801 ~ 8522085 (-)
G178057 NA non-coding downstream 387013 8323619 ~ 8324164 (-)
LOC113536653 NA non-coding downstream 435817 8271107 ~ 8275360 (-)
G177807 NA non-coding downstream 784119 7926293 ~ 7927058 (-)
G178501 NA non-coding upstream 291526 9003644 ~ 9003852 (-)
G178673 NA non-coding upstream 474953 9187071 ~ 9189914 (-)
G178679 NA non-coding upstream 485482 9197600 ~ 9197805 (-)
G178867 NA non-coding upstream 598106 9310224 ~ 9311903 (-)
G178868 NA non-coding upstream 600736 9312854 ~ 9313650 (-)
trnar-acg_8 NA other downstream 463415 8247690 ~ 8247762 (-)
trnar-acg_7 NA other downstream 464402 8246703 ~ 8246775 (-)
trnar-ucg_7 NA other downstream 466456 8244649 ~ 8244721 (-)
igf1rb LOC108271091 other downstream 946747 7675916 ~ 7764430 (-)
si:ch1073-365p7.2 NA other downstream 1122362 7580434 ~ 7588815 (-)
asb7 asb7,LOC107755647,LOC107662256,LOC107742335 other upstream 271064 8983182 ~ 8995120 (-)
mthfs mthfs,LOC102796869 other upstream 608848 9320966 ~ 9336186 (-)
LOC113536412 NA other upstream 675373 9387491 ~ 9407218 (-)
G178942 NA other upstream 810298 9522416 ~ 9523330 (-)
G179035 NA other upstream 1101774 9813892 ~ 9815225 (-)

Expression


Co-expression Network