asb7 (asb7,LOC107755647,LOC107662256,LOC107742335)


Basic Information

Item Value
gene id asb7
gene name asb7,LOC107755647,LOC107662256,LOC107742335
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8983182 ~ 8995120 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU211259
aaaaaaaaaaaaaaaaaaaagttctacgCTCACTGTTCAAGGCCCACAGCATTTAGTCGTGCCTTCACTTGGGTGGATTCTTGGGTTCCTCAACAACATGCACATTTTCTCTGGTGTGTTACTTGTTATTAAATTAAGTTGACTAGTTTTTGTAAGAAACACCAGTATAATCTAGTAAcgtatttattttgttcatttcttacATCTTTAGTCCGATTAAAAAGTATGCATTGTCCCACCTGTATTGAGTAGGCACATGCCTATAATTGGttatacaatactgtgcaataTTAATATTGTTGACAGGTCAAACTATTGTAGTTCTTTTCACAAGGTTGTCCATTCATCTATTTGGAAGCCAGTCCCTAATAAATCTCCTTATTGATGACATATTTAAAGGAGCATTGAACATGGACGTTCTTTCAAATTCAAAGGGTGATACGATTGTAAATCAGGATGAAAGGTTAGGCAAAGGATGTGGAAATTTAAAGTGAAGTGTATATGGCTGgatgatgtgtttatttttattcagctaCACACTAATAAAATGGCGGTGTATTTGTTAAAATAGAGGTTATTGTATTCTTTCAATGTTGCAGGGCTGAACTGAAATTTCCTCACTTAAGCACAGGTGAGCTGGTCATCTGCATCTAAATCCAGGAATAAAGAAGAATTGGACTTTTTCTGTATCTTCAGGTTTTCATAGTTTCAGTAAAGTCCGACTCCACTTtaaaaaacagcagtgttttctCTGAAATTTTgtttacagtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatttggtttTGAAGCGCTGATGTGTTTTCAGAAAGCACTTATTCCGGATTCAAATCGTCTCGACGTCTTCCACGCCGTTCACCACAACAACTACTGAATGTATATAAACTGCTGTTTGCCTAG
>XM_026930818.2
CGTTCCTGATTGGCTACATGCACCCTATCCGAAGTGGACGGCTAACTGGCTAGCTGCATTTTGTTCCAAGTATGAAGCTTTGAATAGTTTTTATATTGGTTTCTTTTCAGCGGTTGCTGCCACAACGCACCAGATACAGTTTGTGACGCTTCTGCAGTTAGAAGTTTGATGCCGATTGGGCTGGATTGAAAAATGCGCCCAAAACACAAAGGGCCTTTCAGAACTGCTGTACATTAATCAAAGGGACGCAGGAGTGGCTGCGCAATGTGACAGGATGCTGAACCATCACTTCAGAAGGAACCCGGACCTGCAGGAGGAGCTGCAGATCCAGGCAGCGGTGGCAGCCGGCGATGTCTACACCGTGCGCAAGATGCTGGAGCAGGGCTACTCGCCCAAGATCAGGGACGCCAACGGATGGACACTGCTGCATTTCTCCGCCGCCAAGGGCAAGGAGCGCTGCGTCCGTGTCTTCCTCGAGCATGGAGcggACCCGACAGTAAAGGACTTCATTGGCGGTTTCACGGCGCTGCACTACGCCGCCATGCACGGACGCGCACGCATTGCTCGCCTTATGCTGGAATCAGAGCATCGTGGCGACATCATCAATGCCAAGAGCAACGACGGCTGGACGCCACTGCACGTGGCTGCACACTACGGCCGTGACTCCTTTGTGCGCCTGCTCTTGGAGTTCCATGCTGATGTAGACCCACTGAGCGACAAGGGCACTACACCACTGCAGCTGGCCATCATCCGAGAGCGCTCGAGCTGCGTGCGGCTGCTGCTTGACCACCATGCCAACATCGACGTGCAGAATGGCTTCCTGCTGCGCTACGCTGTCATCAAGGGCAACCACGCGTACTGCCGCATGTTCCTTCAGCGTGGCGCAGACACCAACCTCGGGCGCGTGGAGGACGGTCAGACACCGCTTCACCTCTCGGCTCTGCGTGACGACGTGCTCTGTGCACAGCTTCTCTACGCCTATGGAGCTGACACAAACACGCGCAATTACGAGGGCCAGACGCCCGCAGCTGTCTCAGCCAGCATGTCCCGCGCCAGCCGGCCCTGCCTCGACTTCCTGCAGGAGGTTACACgCCAACCCAGGACATTGCAGGACCTGTGTCGGATAAAGATTCGTCAGTGCATAGGCCTTCAAAGCTTAAAGTTCCTGGAGGACTTGCCTATTGCCAAGGTGATGAAGGACTACTTAAAACACAAGTTTGACAATGTCTGACAGAGGCTTGGAAATCTCCAGGCATCAGCACAGGAACAGATTCTCTAGCAAAGACTATGCAACCTCTCATTTTCCTTTCTGTTCTTAACGTCGGGCAGCGGATTGTTTTCTACAACCAAGCGTgatgtttttctgtcatttaatCTGGAAATATAGCCAAGCTACCTGTCATGGACACTGAACCCCAGCTTGTGTTCATCATTTGATTATTGACccaggaaaggaaaaagaattacaacatattttatttgaacaaTCCAGTCCTAGTATTAGGTTGGAATTAAGGGTGATATCAAAAGCTGATGTTATGATGAGCTTATATCAACCCAATATCGTGGCTTTTGGTATGTTAttacatataattaaattatttgaatATGGAAATtgatgcaagtttttttttattattcaagcTCATAGTTTGTAGTTCTcaaaacaatttcaaaataCTAATTTACCTATACATCTTTCATATTcacttattcatttttttgtgatcAGCAAAACATTTTATGCATCAATCGCAAAACATTAATGGTATAACTATCAGATTTTCTTATCATGATACACAGATACCAATAAATCATCACACTCCTAGTTTCAAGTATACCTGTACAATAGATAAACAAACAATCCCTTTTATACTAACttactgactttttttgtttaagatgTGTGGAATTTGACATTTCATACAAAATGAAGTCAATTGTGCACCTTCTTCCACTCGACTATTACCAATTCAGCACGTTTCGAAGGTGCACAGAGTTAGTTGTCAcgttaaatacaaaatatttgacTTGTGAAACAAGcattaaaactgtgatttgaacTTTTCTTCAGTTTTCCCACTTGAAGTTTTGGTTTCCTCATGCGGAACTCATTAACAAGGACTACACTATGTATATAATTGTGTCATATGTACAGCAGATATTTTTCTAGAATTATTTAAGCTATGAACTCTTGTATCATAAAGTGTTTAGGATTTTTGTTGAATGGTCAtgcggctttttttttttttttaagtcttaatattttttgtttgttacatttttagAATTGAAACACATTGACAAACTAATTGGGAGCAATTAGTGAAATTGTGGAAATATAGTTAAAATTTTTCCCTCTATCAGATTTATATCTAAGAGTTTTTTGGAAGTTGgcacatggcaaaaaaaaaaaaaaaaaaaaagttctacgCTCACTGTTCAAGGCCCACAGCATTTAGTCGTGCCTTCACTTGGGTGGATTCTTGGGTTCCTCAACAACATGCACATTTTCTCTGGTGTGTTACTTGTTATTAAATTAAGTTGACTAGTTTTTGTAAGAAACACCAGTATAATCTAGTAAcgtatttattttgttcatttcttacATCTTTAGTCCGATTAAAAAGTATGCATTGTCCCACCTGTATTGAGTAGGCACATGCCTATAATTGGttatacaatactgtgcaataTTAATATTGTTGACAGGTCAAACTATTGTAGTTCTTTTCACAAGGTTGTCCATTCATCTATTTGGAAGCCAGTCCCTAATAAATCTCCTTATTGATGACATATTTAAAGGAGCATTGAACATGGACGTTCTTTCAAATTCAAAGGGTGATACGATTGTAAATCAGGATGAAAGGTTAGGCAAAGGATGTGGAAATTTAAAGTGAAGTGTATATGGCTGgatgatgtgtttatttttattcagctaCACACTAATAAAATGGCGGTGTATTTGTTAAAATAGAGGTTATTGTATTCTTTCAATGTTGCAGGGCTGAACTGAAATTTCCTCACTTAAGCACAGGTGAGCTGGTCATCTGCATCTAAATCCAGGAATAAAGAAGAATTGGACTTTTTCTGTATCTTCAGGTTTTCATAGTTTCAGTAAAGTCCGACTCCACTTtaaaaaacagcagtgttttctCTGAAATTTTgtttacagtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatttggtttTGAAGCGCTGATGTGTTTTCAGAAAGCACTTATTCCGGATTCAAATCGTCTCGACGTCTTCCACGCCGTTCACCACAACAACTACTGAATGTATATAAACTGCTGTTTGCCTAGCCCAAAATGAATTGTGTGAATAAATGATTATCACAA
>XM_026930819.2
TAAAGTTCGTTCAAAATGATTTGCAATGCAGCTGTGGAAATTAGTTACCATCTCCTGGGTAGGAGCTAATTTAGCTAACTAGCCTGATAGGTCTGCATTATTGTTAGCTGAGTTATCATTGGGCTAGCTAGCTTAACCACCTCTGTATAATGACAGCGAACGGCTCGATCGTGTCTTCCAGTTAGATTTGTCTTTATGAAGTGCCAGATTGTCTGATTAGAATTAGCTTTAGCTAACATAGCGGCTCCTGGTTCATAACACCAACTGGCTAGCGGCGCTTGCTAAGTTGGCTTCTTTCGGTGTTTGGTTATTATAGTCGTGAATCTGGGCTAGTTGTTGTGCAatatactatttttatttatttacttcttacatgaataaattcattttgcttcatggtaacaatgacatttctctgtgtatttaagGAGATCTACACTTGATAAGACCCATGACACATGATAAGAAAAACGTCCTGAATGCTTAGCGATATTCGGATGTTtctaataaaaatctaattCGGATAAATCTAAATGACGCCATTTTAGagacacataaaaaaaagaaaaatacggTAAAAACAACCCTCTCGTTACTGTATGATGAGGTTATGGCTAAGGGCACAGGAAGTACTTTGCTAACAGGGTCTCCATGTGATTAGATACGAGAAAACGGGTTTATTGTAACATATCCACAGGAGACCCAAGACACCAGGgctgttatttaataataatagtatcaCTTATTAATGTCCACAGGTGCTAATCAGGGTGACGTTCAGCAGTTAACCCTTGATAGTAGGCGGAGTTGTTTGTTGATGCTAACCAGTCTCTTGGCTAACTAGTTTCTTGGCTAACTAGTCGTGCTTTGGTTACTTAAGCAAAGTTTATTCGTCCTTAAGAAGCTAAAACTGAGTTTGTGACGCTTCTGCAGTTAGAAGTTTGATGCCGATTGGGCTGGATTGAAAAATGCGCCCAAAACACAAAGGGCCTTTCAGAACTGCTGTACATTAATCAAAGGGACGCAGGAGTGGCTGCGCAATGTGACAGGATGCTGAACCATCACTTCAGAAGGAACCCGGACCTGCAGGAGGAGCTGCAGATCCAGGCAGCGGTGGCAGCCGGCGATGTCTACACCGTGCGCAAGATGCTGGAGCAGGGCTACTCGCCCAAGATCAGGGACGCCAACGGATGGACACTGCTGCATTTCTCCGCCGCCAAGGGCAAGGAGCGCTGCGTCCGTGTCTTCCTCGAGCATGGAGcggACCCGACAGTAAAGGACTTCATTGGCGGTTTCACGGCGCTGCACTACGCCGCCATGCACGGACGCGCACGCATTGCTCGCCTTATGCTGGAATCAGAGCATCGTGGCGACATCATCAATGCCAAGAGCAACGACGGCTGGACGCCACTGCACGTGGCTGCACACTACGGCCGTGACTCCTTTGTGCGCCTGCTCTTGGAGTTCCATGCTGATGTAGACCCACTGAGCGACAAGGGCACTACACCACTGCAGCTGGCCATCATCCGAGAGCGCTCGAGCTGCGTGCGGCTGCTGCTTGACCACCATGCCAACATCGACGTGCAGAATGGCTTCCTGCTGCGCTACGCTGTCATCAAGGGCAACCACGCGTACTGCCGCATGTTCCTTCAGCGTGGCGCAGACACCAACCTCGGGCGCGTGGAGGACGGTCAGACACCGCTTCACCTCTCGGCTCTGCGTGACGACGTGCTCTGTGCACAGCTTCTCTACGCCTATGGAGCTGACACAAACACGCGCAATTACGAGGGCCAGACGCCCGCAGCTGTCTCAGCCAGCATGTCCCGCGCCAGCCGGCCCTGCCTCGACTTCCTGCAGGAGGTTACACgCCAACCCAGGACATTGCAGGACCTGTGTCGGATAAAGATTCGTCAGTGCATAGGCCTTCAAAGCTTAAAGTTCCTGGAGGACTTGCCTATTGCCAAGGTGATGAAGGACTACTTAAAACACAAGTTTGACAATGTCTGACAGAGGCTTGGAAATCTCCAGGCATCAGCACAGGAACAGATTCTCTAGCAAAGACTATGCAACCTCTCATTTTCCTTTCTGTTCTTAACGTCGGGCAGCGGATTGTTTTCTACAACCAAGCGTgatgtttttctgtcatttaatCTGGAAATATAGCCAAGCTACCTGTCATGGACACTGAACCCCAGCTTGTGTTCATCATTTGATTATTGACccaggaaaggaaaaagaattacaacatattttatttgaacaaTCCAGTCCTAGTATTAGGTTGGAATTAAGGGTGATATCAAAAGCTGATGTTATGATGAGCTTATATCAACCCAATATCGTGGCTTTTGGTATGTTAttacatataattaaattatttgaatATGGAAATtgatgcaagtttttttttattattcaagcTCATAGTTTGTAGTTCTcaaaacaatttcaaaataCTAATTTACCTATACATCTTTCATATTcacttattcatttttttgtgatcAGCAAAACATTTTATGCATCAATCGCAAAACATTAATGGTATAACTATCAGATTTTCTTATCATGATACACAGATACCAATAAATCATCACACTCCTAGTTTCAAGTATACCTGTACAATAGATAAACAAACAATCCCTTTTATACTAACttactgactttttttgtttaagatgTGTGGAATTTGACATTTCATACAAAATGAAGTCAATTGTGCACCTTCTTCCACTCGACTATTACCAATTCAGCACGTTTCGAAGGTGCACAGAGTTAGTTGTCAcgttaaatacaaaatatttgacTTGTGAAACAAGcattaaaactgtgatttgaacTTTTCTTCAGTTTTCCCACTTGAAGTTTTGGTTTCCTCATGCGGAACTCATTAACAAGGACTACACTATGTATATAATTGTGTCATATGTACAGCAGATATTTTTCTAGAATTATTTAAGCTATGAACTCTTGTATCATAAAGTGTTTAGGATTTTTGTTGAATGGTCAtgcggctttttttttttttttaagtcttaatattttttgtttgttacatttttagAATTGAAACACATTGACAAACTAATTGGGAGCAATTAGTGAAATTGTGGAAATATAGTTAAAATTTTTCCCTCTATCAGATTTATATCTAAGAGTTTTTTGGAAGTTGgcacatggcaaaaaaaaaaaaaaaaaaaaagttctacgCTCACTGTTCAAGGCCCACAGCATTTAGTCGTGCCTTCACTTGGGTGGATTCTTGGGTTCCTCAACAACATGCACATTTTCTCTGGTGTGTTACTTGTTATTAAATTAAGTTGACTAGTTTTTGTAAGAAACACCAGTATAATCTAGTAAcgtatttattttgttcatttcttacATCTTTAGTCCGATTAAAAAGTATGCATTGTCCCACCTGTATTGAGTAGGCACATGCCTATAATTGGttatacaatactgtgcaataTTAATATTGTTGACAGGTCAAACTATTGTAGTTCTTTTCACAAGGTTGTCCATTCATCTATTTGGAAGCCAGTCCCTAATAAATCTCCTTATTGATGACATATTTAAAGGAGCATTGAACATGGACGTTCTTTCAAATTCAAAGGGTGATACGATTGTAAATCAGGATGAAAGGTTAGGCAAAGGATGTGGAAATTTAAAGTGAAGTGTATATGGCTGgatgatgtgtttatttttattcagctaCACACTAATAAAATGGCGGTGTATTTGTTAAAATAGAGGTTATTGTATTCTTTCAATGTTGCAGGGCTGAACTGAAATTTCCTCACTTAAGCACAGGTGAGCTGGTCATCTGCATCTAAATCCAGGAATAAAGAAGAATTGGACTTTTTCTGTATCTTCAGGTTTTCATAGTTTCAGTAAAGTCCGACTCCACTTtaaaaaacagcagtgttttctCTGAAATTTTgtttacagtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatttggtttTGAAGCGCTGATGTGTTTTCAGAAAGCACTTATTCCGGATTCAAATCGTCTCGACGTCTTCCACGCCGTTCACCACAACAACTACTGAATGTATATAAACTGCTGTTTGCCTAGCCCAAAATGAATTGTGTGAATAAATGATTATCACAA
>XM_026930820.2
GCTTCTTCGTTCCTGATTGGCTACATGCACCCTATCCGAAGTGGACGGCTAACTGGCTAGCTGCATTTTGTTCCAAGTATGAAGCTTTGAATAGTTTTTATATTGGTTTCTTTTCAGCGGTTGCTGCCACAACGCACCAGATACAGTTTGTGACGCTTCTGCAGTTAGAAGTTTGATGCCGATTGGGCTGGATTGAAAAATGCGCCCAAAACACAAAGGGCCTTTCAGAACTGCTGTACATTAATCAAAGGGACGCAGGAGTGGCTGCGCAATGTGACAGGATGCTGAACCATCACTTCAGAAGGAACCCGGACCTGCAGGAGGAGCTGCAGATCCAGGCAGCGGTGGCAGCCGGCGATGTCTACACCGTGCGCAAGATGCTGGAGCAGGGCTACTCGCCCAAGATCAGGGACGCCAACGGATGGACACTGCTGCATTTCTCCGCCGCCAAGGGCAAGGAGCGCTGCGTCCGTGTCTTCCTCGAGCATGGAGcggACCCGACAGTAAAGGACTTCATTGGCGGTTTCACGGCGCTGCACTACGCCGCCATGCACGGACGCGCACGCATTGCTCGCCTTATGCTGGAATCAGAGCATCGTGGCGACATCATCAATGCCAAGAGCAACGACGGCTGGACGCCACTGCACGTGGCTGCACACTACGGCCGTGACTCCTTTGTGCGCCTGCTCTTGGAGTTCCATGCTGATGTAGACCCACTGAGCGACAAGGGCACTACACCACTGCAGCTGGCCATCATCCGAGAGCGCTCGAGCTGCGTGCGGCTGCTGCTTGACCACCATGCCAACATCGACGTGCAGAATGGCTTCCTGCTGCGCTACGCTGTCATCAAGGGCAACCACGCGTACTGCCGCATGTTCCTTCAGCGTGGCGCAGACACCAACCTCGGGCGCGTGGAGGACGGTCAGACACCGCTTCACCTCTCGGCTCTGCGTGACGACGTGCTCTGTGCACAGCTTCTCTACGCCTATGGAGCTGACACAAACACGCGCAATTACGAGGGCCAGACGCCCGCAGCTGTCTCAGCCAGCATGTCCCGCGCCAGCCGGCCCTGCCTCGACTTCCTGCAGGAGGTTACACGTATGTAA

Function

symbol description
asb7 Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within intracellular signal transduction. Orthologous to human ASB7 (ankyrin repeat and SOCS box containing 7).

NR:

description
PREDICTED: uncharacterized protein LOC106593589 isoform X3

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10329 ASB7; ankyrin repeat and SOCS box protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
TU211259 False 931 lncRNA 0.36 1 8983218 8984148
XM_026930818.2 False 3373 mRNA 0.42 5 8983182 8995113
XM_026930819.2 True 4149 mRNA 0.41 5 8983182 8994947
XM_026930820.2 False 1106 mRNA 0.58 4 8989162 8995120

Neighbor

gene id symbol gene type direction distance location
aldh1a3 aldh1a3,LOC107692006,LOC107742307,LOC107553814,LOC106562593,LOC107755645,LOC107662254 coding downstream 32373 8926812 ~ 8950809 (-)
lrrk1 lrrk1,LOC106593346,LOC106562602 coding downstream 58797 8807587 ~ 8924385 (-)
trnae-uuc_3 NA coding downstream 92484 8890627 ~ 8890698 (-)
plekho2 plekho2 coding downstream 370876 8596180 ~ 8612306 (-)
ankdd1a ankdd1a coding downstream 393830 8572475 ~ 8589352 (-)
mesd mesdc2,LOC107591313,LOC107737020,LOC107693043,LOC107553745,LOC107709495 coding upstream 763532 9758652 ~ 9768100 (-)
stard5 stard5,star5,LOC107691451,LOC107709494 coding upstream 832828 9827948 ~ 9835960 (-)
LOC113536465 tmc3,LOC107553743,LOC107736984,LOC102796631 coding upstream 842879 9837999 ~ 9864785 (-)
mex3b mex3b,mex3d,LOC100534722,LOC107596262,LOC101483145,LOC102192827 coding upstream 1073397 10068517 ~ 10073310 (-)
efl1 efl1,eftud1 coding upstream 1118963 10114083 ~ 10251340 (-)
G178398 NA non-coding downstream 271064 8711177 ~ 8712118 (-)
G178227 NA non-coding downstream 389777 8593186 ~ 8593405 (-)
G178208 NA non-coding downstream 461097 8521801 ~ 8522085 (-)
G178057 NA non-coding downstream 659018 8323619 ~ 8324164 (-)
LOC113536653 NA non-coding downstream 707822 8271107 ~ 8275360 (-)
G178501 NA non-coding upstream 8524 9003644 ~ 9003852 (-)
G178673 NA non-coding upstream 191951 9187071 ~ 9189914 (-)
G178679 NA non-coding upstream 202480 9197600 ~ 9197805 (-)
G178867 NA non-coding upstream 315104 9310224 ~ 9311903 (-)
G178868 NA non-coding upstream 317734 9312854 ~ 9313650 (-)
trnar-acg_8 NA other downstream 735420 8247690 ~ 8247762 (-)
trnar-acg_7 NA other downstream 736407 8246703 ~ 8246775 (-)
trnar-ucg_7 NA other downstream 738461 8244649 ~ 8244721 (-)
igf1rb LOC108271091 other downstream 1218752 7675916 ~ 7764430 (-)
si:ch1073-365p7.2 NA other downstream 1394367 7580434 ~ 7588815 (-)
mthfs mthfs,LOC102796869 other upstream 325846 9320966 ~ 9336186 (-)
LOC113536412 NA other upstream 392371 9387491 ~ 9407218 (-)
G178942 NA other upstream 527296 9522416 ~ 9523330 (-)
G179035 NA other upstream 818772 9813892 ~ 9815225 (-)
sh3gl3a sh3gl3a,LOC108271217,LOC108439633,LOC107709492,LOC107685195,LOC107591296 other upstream 1491615 10486735 ~ 10523579 (-)

Expression


Co-expression Network