G178539


Basic Information

Item Value
gene id G178539
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 9205457 ~ 9205678 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU211320
ATTTTGTGCTATAatcaaagtagcacttcttacctttaaatgagttatactgtatatacaagtatttgctttagatcgaTCAACATACAGAGATATTaccttgttaaatctataacactgactatacagtttgctgctGTGAGGAGGTAAGTATACATCACTCATTAAAGTTAGCTAGATAGCTTGTTCGtaacaaaacatgaacatggAGGCATACAAGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU211320 True 222 lncRNA 0.33 1 9205457 9205678

Neighbor

gene id symbol gene type direction distance location
adamts17 adamts17,LOC107662259,LOC107692780,LOC107563246,LOC107742308,LOC107553817,LOC107719674 coding upstream 15538 9039210 ~ 9189919 (+)
cers3a cers3,LOC107692405 coding upstream 170003 9007369 ~ 9035454 (+)
lins1 lins1 coding upstream 203606 8995376 ~ 9001851 (+)
chsy1 chsy1,LOC107662251,LOC107755644,LOC107742304 coding upstream 422615 8727720 ~ 8782842 (+)
selenos selenos coding upstream 481375 8718527 ~ 8724082 (+)
minar1 kiaa1024,si:cabz01029535.1,LOC107719677,LOC107742309,LOC107662343,LOC107692337 coding downstream 20769 9226447 ~ 9257997 (+)
zfand6 zfand6 coding downstream 130969 9336647 ~ 9349909 (+)
fah fah,LOC107662319,LOC107691923,LOC107742310 coding downstream 144518 9350196 ~ 9378551 (+)
arnt2 arnt2 coding downstream 212847 9418525 ~ 9529240 (+)
abhd17c abhd17c,LOC107662262,LOC102793890 coding downstream 341068 9546746 ~ 9590337 (+)
G178383 NA non-coding upstream 221215 8982965 ~ 8984242 (+)
G178260 NA non-coding upstream 396513 8807605 ~ 8808944 (+)
G178192 NA non-coding upstream 615902 8588820 ~ 8589555 (+)
G178170 NA non-coding upstream 660982 8544269 ~ 8544475 (+)
LOC113536702 LOC108271401 non-coding upstream 683335 8514131 ~ 8522122 (+)
G178740 NA non-coding downstream 71927 9277605 ~ 9277816 (+)
G178741 NA non-coding downstream 72209 9277887 ~ 9278116 (+)
G178761 NA non-coding downstream 93708 9299386 ~ 9299657 (+)
G178760 NA non-coding downstream 95316 9300994 ~ 9301338 (+)
G178764 NA non-coding downstream 103639 9309317 ~ 9310183 (+)
LOC113536578 NA other upstream 934707 8253421 ~ 8270750 (+)
trnar-ucg_8 NA other upstream 957369 8248016 ~ 8248088 (+)
trnar-acg_6 NA other upstream 960433 8244952 ~ 8245024 (+)
trnar-ucg_6 NA other upstream 961809 8243355 ~ 8243648 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other upstream 1934137 7267831 ~ 7271320 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other downstream 1604992 10810670 ~ 10850923 (+)
G179632 NA other downstream 1890475 11096153 ~ 11098811 (+)
G179643 NA other downstream 1954668 11160346 ~ 11161597 (+)
G179758 psmd1 other downstream 2222935 11428613 ~ 11430897 (+)
G180121 NA other downstream 2849280 12054958 ~ 12055749 (+)

Expression


Co-expression Network