G178673


Basic Information

Item Value
gene id G178673
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 9187071 ~ 9189914 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU211458
TataagattcatttatttttgtataactatTTAAACAGTTGTAATCAAATCAGCACCATCAAAAATGCAGATTATGTACCAATCATGTGCAACTAAAGACATACAGTACTGGAATATATACGCATATCTGCACCATAGCAGTAAATGAAGCAATTTTCACCAATAGGCTGAAGTCTCTGAAATAGTAAGGCAGCTACATTTTAGTATTAAATAATCATCACAAAACATATGTGTCAGAAAAGACCTATGGAAGAACAATCATGagaaaaacaggacaaaaaaaactgttgaatTCCACAGTAGTGAAATTTGTCTAGCACCAAATGAACCCTGCACTGCCTGAGAAAACAGGGGCCAAGGtatcttgaagaaaaaaaaacaaacaacaaaaacaacaacaaaaaaaaaacgacacacacacacacacacacacacacacctacctacACAGAGGGACTTTTATGTAGTGTAAAAACTTGGAAAGTTCACATTTTACACCTGTGATCCAAAGTAATGCAGCTGCATGTGAGCCTATAACCAGTTATAAAGACTTTACTGATGGTGTCATCAGGAGTTACTGAAAGATAAAACCTggtcattttgtttaataatgtgtCCAATGATTTTCATTGTAAATAACATAACTTTGTGTTGAACATGACTCCTGGAAATATGAAAATCTATGctagtatgtaaatgtatgctAGTCAAACATCCACTTTTCTTACATATGTAAACACATGTGCAATGTTCTTATTGAAATATATCAAACATTAACAGTACTTACTAAAACTGTGAAACAATGAAACACAAAAggaaaatatgttgaaattaaTGTTTTAGGGTGACAAACCCTTAAGTTGGAAAAATAAGTACGAATATagttaaataaatctgtgttaatCCTGTAGCCATGGAAAGAGTGGAATGGGGTGTTTGACCAAATTTActgacaatgaaaaaaatattgaaaaaaaaagatgggaaAGGAATTGGCCTAGTCATTAGAAGACTGATCTTAATCTTTCAATATTAACCTTTAACATTACCTGCTTTGTACTAATGAGAAAACTGGGTAAAGTAGAATTAATGTCAACAAAAGAACAGTTTCTACTGGTGTTATCTGGTgtaaatttagTCACCAAACcatgttttgcacatttaaGTGTTtcccctgctctaacacacctactTCAACTCTGGAAGGACTATTAATGAGCTCACCAGGTGTGTTAGTGCAAGAACAACAGTAAAATGCGCAGGAGAAAGgatactccaggaccagggttgggaacatGTGGTCTATATGAATTGTCCAATACTCACACATCCTATGTGTCAAAACCTAGCAATGTTTCAAAAAAACTTCGAGTCCTAACTCCCTCTAGAGTCTCTACTATGACTGGTCTTAGTTGAACACTTGTTTTGGTGTTCCAAATGGTGCATGTGCAATCCTGCAGTCCTAGTTTGGTTGCAGGATTTAGCAAATGAGCTTTAGGTAGCCTGTAGTGTATTTATGTGCAGaagtgccaacattgctaacaagaacaATCcagcaagaggaaaaaaaaaacagaattttaccacaaaaagaGTATATTGGTTGATGAGTGCGGCAAACCATGAGGCAAAGGTCTGGTGTGATTTGCTATGTAAGAAGCTCCTCCATTTTATTACTGACCACTTggtttctattggctcacaagacagAGGCTTGTGAAATCGCCAGTCAAacttcacctagataaagttggTGCAAAAAAAGTAAGTGACCACTACCATAAGCAAGAGCATGTCTTTTACCTTCAGTCTTTTCCATTTCAGTAAACTGTCTGctgaattttattcatatttggcCTGTCGAtttctttttctgaaaaagcagaaaagtgtagCTTTCAGGTGTTTCCCATATTGCCGTATCGAGGGCTCAAATCTGTTGCcacctctgtatgtgtgtagcaCTAGTAATTTTGCTTAGTATCTTTTCacattaatgtacacagataaGGCTAGAATTAGTTGCTCTTAATCCTCTTTAATAAGTGTAAAGTCCTCTCTCAAAATCAGTCTTAGCTATGACCTATTTAGCAGTTATAGATGATCTTACTTAAGACAACCATGGCTTGTGTCATAGCTCATGGGGTGCAACTGGCCCCATAAACCATGGCATTCTGGATCATATAATCTCGTTAAGGCACTTAATGGACTTCTCTAAGAAATCTGGAAGAAATAAGAGATAAGAAAATGAATATGTGATTAGGATATCAAAATGTCAATAATGTCCCGTTGCTCAGTTCTGGGATTACTGGCCAACCAGTGGCTTTTAGAAAGCAATGTAAGCCTTTCCTAAATGGTCAGCTTACTGTACAACAGCCAAGCTGCTATGTTCAAGAAGTCATCTCCAATGGCCTCCTATGTTCTCTTATGTTAAACTTTGGTTTACagcaaaacaattaaaaaagtcATAGACCTTTTGCACCATTTTAAAGTCAAAACCTTAAACGTTTTAACATCTCATCTGAAAGATCTGGCATGTGCATCAATTTCCCGGTTACTGCTTTAAAATCCAATAATCCTTAATAACAATATACACAGTGTCACTTATGACAGTACGAAAAGaggacataaaaataaaaaagctgctACGTGGCAAGAAGTGCCAGGCTCATTAACTTTCGTGGGACATTGTGCTGGCGTAAAAGTCTCTGCAGGTTTGGCAGCAGCGTTGGTACCAGCGCATGTCCTGGCACAGGTTCTTCTCCCGAATCACCCGACAGTACACCGTCCACTGATCTCCCGTGCACTTATACGTCAGTGCCG

Function

NR:

description
PREDICTED: serine/threonine-protein phosphatase 2A catalytic subunit beta isoform

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU211458 True 2823 lncRNA 0.37 2 9187071 9189914

Neighbor

gene id symbol gene type direction distance location
aldh1a3 aldh1a3,LOC107692006,LOC107742307,LOC107553814,LOC106562593,LOC107755645,LOC107662254 coding downstream 236262 8926812 ~ 8950809 (-)
lrrk1 lrrk1,LOC106593346,LOC106562602 coding downstream 262686 8807587 ~ 8924385 (-)
trnae-uuc_3 NA coding downstream 296373 8890627 ~ 8890698 (-)
plekho2 plekho2 coding downstream 574765 8596180 ~ 8612306 (-)
ankdd1a ankdd1a coding downstream 597719 8572475 ~ 8589352 (-)
mesd mesdc2,LOC107591313,LOC107737020,LOC107693043,LOC107553745,LOC107709495 coding upstream 568738 9758652 ~ 9768100 (-)
stard5 stard5,star5,LOC107691451,LOC107709494 coding upstream 638034 9827948 ~ 9835960 (-)
LOC113536465 tmc3,LOC107553743,LOC107736984,LOC102796631 coding upstream 648085 9837999 ~ 9864785 (-)
mex3b mex3b,mex3d,LOC100534722,LOC107596262,LOC101483145,LOC102192827 coding upstream 878603 10068517 ~ 10073310 (-)
efl1 efl1,eftud1 coding upstream 924169 10114083 ~ 10251340 (-)
G178501 NA non-coding downstream 183219 9003644 ~ 9003852 (-)
G178398 NA non-coding downstream 474953 8711177 ~ 8712118 (-)
G178227 NA non-coding downstream 593666 8593186 ~ 8593405 (-)
G178208 NA non-coding downstream 664986 8521801 ~ 8522085 (-)
G178057 NA non-coding downstream 862907 8323619 ~ 8324164 (-)
G178679 NA non-coding upstream 7686 9197600 ~ 9197805 (-)
G178867 NA non-coding upstream 120310 9310224 ~ 9311903 (-)
G178868 NA non-coding upstream 122940 9312854 ~ 9313650 (-)
G178914 arnt2,LOC107395664 non-coding upstream 251005 9440919 ~ 9443927 (-)
G178961 NA non-coding upstream 435370 9625284 ~ 9627183 (-)
asb7 asb7,LOC107755647,LOC107662256,LOC107742335 other downstream 191951 8983182 ~ 8995120 (-)
trnar-acg_8 NA other downstream 939309 8247690 ~ 8247762 (-)
trnar-acg_7 NA other downstream 940296 8246703 ~ 8246775 (-)
trnar-ucg_7 NA other downstream 942350 8244649 ~ 8244721 (-)
igf1rb LOC108271091 other downstream 1422641 7675916 ~ 7764430 (-)
mthfs mthfs,LOC102796869 other upstream 131052 9320966 ~ 9336186 (-)
LOC113536412 NA other upstream 197577 9387491 ~ 9407218 (-)
G178942 NA other upstream 332502 9522416 ~ 9523330 (-)
G179035 NA other upstream 623978 9813892 ~ 9815225 (-)
sh3gl3a sh3gl3a,LOC108271217,LOC108439633,LOC107709492,LOC107685195,LOC107591296 other upstream 1296821 10486735 ~ 10523579 (-)

Expression


Co-expression Network