G178764


Basic Information

Item Value
gene id G178764
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 9309317 ~ 9310183 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU211550
AATCAAATCAGCCTActctctttttcacacacattcccatTACCCCTCATCCTGagatgtgtctgtgtttgatcTGTCGCTACTGCACTGCTCTGTGCTGTCCAGAAAATTTGGCCTTCGCCTTCTGATGCAGTCAGTATGCCATAGCTCAACAGCAGGACTGGGATCGTGCTCAGAAATGCTTGGAGACGAAAGATGCACAATTAGAAGGTCAGATAATGTCTCTGGTTTTAGGCTAGACCACCAGTCTGATTTTACCTGTTTCATCACATTAAATCCCCTCTCACACTCAGCAGTGTTAGTCGTCGGTATCAAATACAAGCCAGTCTCTCTTCGATCCACTGTCAGTGAAACGCCATTTCTCGCATGACTTTCTGATGTTTGCTCATCATGTTTCCGTTTTGGCGGCGTAACCCCAGGTACGTGTTGCCACATTCTCGAGTTACGTtgaataaagaaaggaaaagttaAATAAAGCAGCAATATTTTCTGAGGTAAAAGTTATTAGAACCGTGCCTACAATCAAGCTAGCCAATCACCGCTCTGACCTTATCAGCccatttctattctattatttGATTCGCTCTTGTCACGTATGACAGGACAGCTAACCAATCACGATGAGCTCGTCTTCggaaaagattattttattcgCTTACATCAGAAACAGTGAATCGCTTTAAAACTGGCTGTTGTTCTCATGACATCGCATTGTTATAATTCGGAAAAGTTTTACCCGCCAACTGGCGACTGACACTGTTACATACACTCGTCAACGCCGATTTTTACTCGCATTTGGCGCTTTGCGAGTGTTAATTTTAGGccctgcatacacacatacatatgtctTACTATCTTTTGTGAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU211550 True 867 lncRNA 0.43 1 9309317 9310183

Neighbor

gene id symbol gene type direction distance location
minar1 kiaa1024,si:cabz01029535.1,LOC107719677,LOC107742309,LOC107662343,LOC107692337 coding upstream 51320 9226447 ~ 9257997 (+)
adamts17 adamts17,LOC107662259,LOC107692780,LOC107563246,LOC107742308,LOC107553817,LOC107719674 coding upstream 119398 9039210 ~ 9189919 (+)
cers3a cers3,LOC107692405 coding upstream 273863 9007369 ~ 9035454 (+)
lins1 lins1 coding upstream 307466 8995376 ~ 9001851 (+)
chsy1 chsy1,LOC107662251,LOC107755644,LOC107742304 coding upstream 526475 8727720 ~ 8782842 (+)
zfand6 zfand6 coding downstream 26464 9336647 ~ 9349909 (+)
fah fah,LOC107662319,LOC107691923,LOC107742310 coding downstream 40013 9350196 ~ 9378551 (+)
arnt2 arnt2 coding downstream 108342 9418525 ~ 9529240 (+)
abhd17c abhd17c,LOC107662262,LOC102793890 coding downstream 236563 9546746 ~ 9590337 (+)
cemip cemip,LOC107591290,LOC107691638,LOC107662322,LOC107553744 coding downstream 315006 9625189 ~ 9754446 (+)
G178760 NA non-coding upstream 7979 9300994 ~ 9301338 (+)
G178761 NA non-coding upstream 9660 9299386 ~ 9299657 (+)
G178741 NA non-coding upstream 31201 9277887 ~ 9278116 (+)
G178740 NA non-coding upstream 31501 9277605 ~ 9277816 (+)
G178539 NA non-coding upstream 103639 9205457 ~ 9205678 (+)
G178763 mthfs non-coding downstream 10777 9320960 ~ 9332878 (+)
G178789 NA non-coding downstream 172152 9482335 ~ 9482920 (+)
G178798 NA non-coding downstream 324576 9634759 ~ 9640636 (+)
G178817 NA non-coding downstream 440262 9750445 ~ 9750713 (+)
G178834 NA non-coding downstream 472358 9782541 ~ 9782746 (+)
LOC113536578 NA other upstream 1038567 8253421 ~ 8270750 (+)
trnar-ucg_8 NA other upstream 1061229 8248016 ~ 8248088 (+)
trnar-acg_6 NA other upstream 1064293 8244952 ~ 8245024 (+)
trnar-ucg_6 NA other upstream 1065669 8243355 ~ 8243648 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other upstream 2037997 7267831 ~ 7271320 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other downstream 1500487 10810670 ~ 10850923 (+)
G179632 NA other downstream 1785970 11096153 ~ 11098811 (+)
G179643 NA other downstream 1850163 11160346 ~ 11161597 (+)
G179758 psmd1 other downstream 2118430 11428613 ~ 11430897 (+)
G180121 NA other downstream 2744775 12054958 ~ 12055749 (+)

Expression


Co-expression Network