G178798


Basic Information

Item Value
gene id G178798
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 9634759 ~ 9640636 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU211587
GGAATACTCTCTCTGCTCTATCAGTGACGGTGACATTAGCTGATTGTAGACATCTGTGCGCTCATACATGCGGAAGGTGGTAGATAGCTCTTTTCGCTAAGTGTGTTACAtggccctgtgatgcagcatgagcagcagtttgaaaagatgtgcttggctggcttcacatgtctctgaGAAAGCAccttagccttcaccctccctggttggtaaaTATTGTAAGAtaagggagagctggctggtttGTGGGATTTGGCAGGTGACTAAATTGGAGAGAAGGGGCAGGGGGGGGTTAGATTCAATAAAATCCCTACAATCCCTATTGGTTTGCGTCAATTAgctaaatttaatattttctaaacTGCTAAATGGTTGGACATGTCTCCTGTGAGAATGATGAGTATAAGCATGATGAGAGAATATATGTAGttaaaactgcaaaaattgcCCCAAGTTCACCCTATGGGAAAGACGGGCACTgattgaaacaggaaataagaGAGGTATGTAATAGACTCTTCTGTGCTGTTATCTCCCCCATCATCTGCAGTAAAAGCTGGAGCACGGCGGAAATGAAGCCATCCAGCAGCCAGAAATGAAGCCATatatctgaacacacactgactcacttaCAAGTGAGCAAGCTgcatttctgctttattttgtgtgtgttcagcatggCACTTTGCTGATGCAGTTATCCCTTTACATTATTGATGGCTATAAATGAGGCTAAGAGGAAGAATGACAGTTGAAAGAACCAGTGATGTCACTTTGCATCTTTCTCACACAAATGTGTTCATTTCCAACCCTTGCAGCATTAATCTGTGCGAATCAATTATACTGAGGGTTTGCACAGGAGGAATATTTGATCTGTAATCTCGCTTGATATGCTGATAAACAGAGCAGCAGCAGGCAGATGCTCTGATTAGGAATCACAGTGGTGGAAGAGCTGAAATGCAAAGCAGTGTTGATTGTAGTGACAATGTTTGGGGAGATTTGAATTCTTGTATTGTGCTTTTGGAAGTTGCTACATGACAAAATGTTCTTTCTACATTCTACAAATGCCAACATTTTTTAGGAAGTTGGAGAGCGGAGGCTTGCCTAGTGTACACAACCATGGAGCAGTTGAGGTTGATCAAAGGCCCAGTGGTGGCAAACtggtagtgctgggatttgaactcacaaccttctgggcACATTAACCACTGACTTGCATCTAttacaatgctttttttttgctaaacaaaAGGTACTGTTCAAGTAGATTTTCCTTTTCTAATGTATCCTCAGAGGTacagtgtaaatgtaagtaaattatAGATCCCTTTGCTGCCTAGGAGCTAAATTCTACAATGAAAATATTGAATTTCTCTTGTAATGAAAACTATGCATGCCTTGTGAGTTAACTGTTAAGGCAGCTTTGTGCAGATATAAGGCCAATGTAAAAAGAAGAAGTCCTAAATGTAGAGAGTCATTGCATGGTGATACAGCAATTCATTTTTTGtgaagtatatttttaaaaaacagccaaaaatagaaaaagaaaaatatatgcaAGGCGGTTGGGGAAAGCCATCAAATGTCGCCGTATCTGCGCAAGTctgttaaaatgaagaaaactcaGGTTTCGACCATAGTTGAGTTTCTTTGCTGCTACTATAGGTCTTTAagtaagcatttttattttattttaccaaTACaacatagaaatgtttttagttATGCCTTTTTCTACAAAGATCATGTCACGTAAGGAGCCAGTTTTCCAGCAGGAGGCGGAGTTCCATACATGCACGGCGTGATACATGGCATATCccgtatttataaatatttattatgttagCTTTTTTGCTGCAACTTTTCACGGCAACTAGCTCAGCTcgatgttgcacagcattgcacacatctgcactttattccacataGAGTCCATACTTTTTTCTGCCATGTATCATGTATatcctttatattatatttttagattttaatttttttttGTTTAATGTCAACGGACAttcataaaaagcatttcactgcacgttatactgtgtatttttgtgtgtgagaccaacaaaatttgaatttgagctTGTTTCCAggtcagaaaaatgtaaaaagacatCTTAAATGGACACAAATCTTAAAATGCATGGTAACATtgcaattcatttttttgtaacgtgtctttaaaaatacagagaaaaaaaaggaaaattttcAAACTGGACCTTTCAGGCCTAAATACATATTTTGAAGATATTTGAGTTTTAAAAGTAAATCACTTAAGCTCTAAAATATATATCCTTGATGTGTTCATATATAGTTAATTCCTTTTCAGAGATCACAGTGATCACAGTCAGGGTCAGATCACTAAAAGTCATAGCTCTTATGGAAAATCCATTTTTGCTTGGGAGGCCTGGCTACTGTATTCTTGTGTAGCCTGTTTTTTTCCATAAAGGTACATTCTGTACCTCCACACATCACTCAGTGTTTTCAGTTCAGTGGAATGCACTTGTGATTATGTGATTCATATTTCAGCTGCTGACCTCTCAACCTGCGAGATGTGTTTATGGCTATCTCTGATAATGGGTTGGGGATTGtacacagtttattttaaatacacagacacagaacatCTCTGCAGAACATCAGTTTCACCAGTGTGGATTCAGTTTAGCTTATTTTGTAATTGGCTGCATATTTGGTAGGAGGACACAAAGATAAGTGTAGGTTGGTGAGGTGGAACCCAGGCTCTAGGGTATCTGAGAACTGTGCCTTTAATCTTTCAGCCCCCTTATAAACCTTAATGGCTCGGTTCTTGCATTCCTTAATGGCACGGCTTTTAAAGAGAGTAGAAATAAATCATAAGATCACATGGAATTCAGTCATATGCTGTTTAATGTACAGGTAAGTTAGCATATATACTACACTCCTCTGACTTTAGCTAGTCCTCAGACTTGATTAGTGATGTCAAGTTAATCACTCCATCCATACACAAACGCAATATATGCTAAGCTACTCGACTCAATCACGAATGCATGCACTGAAACATTCATGGCTCCATCTGTCTGTTGTTGTCCAAAGAGCCTCAGCAACAGATGACAGTCCTAAATTTATACACTTCGACTCATGCATTCCAGCTGCCTCCTTTCCCTGTTCCTCCTTCCAcatttcattcatcattaaGTAAGGCTTCTGTGTGGATTTCGTAGTCCATCTGAGAATTTGCAAATCATTCACTAATGGCAAGAGTGTACATCTGTGTTTCTCCACAATGTAACTTAAGCAACATGGGTTGCACTGAGAGCTAATGGGCTCACAGTGCAAGTACTCAGTTTGTTTTCCATTAACGTAGACAAGATCTCTAGGATGCAAGGATTTTTGCCAGCATGTCACCTTATTTCTGTTTGCTGTCACATTTCTCACAGCAGGAGTTAAAACCATGACATGAAGAAATGGCTGGGGAAACAACATCGATAGCACTTAGCTGTCTGCGTGAATTCTGATTTGTGCATACAAATCATTATTTCCATTAGGAGTGACGATTATGAATACTacgaactgaaaaaaaagagaactatCTGGTTAGCTAGAAATCTGTGAAAGGGAAAAGCCAAGCCAATGACTTCCTTCTTTCTATTTGACAGCTTCCCAATATAGACTCAGAGGGCcggatgtacagtatgtacatcaGGAAGCATGAACAGCAATTTAAAAGCCACAGTGACGTGGTGGAAATGGTCAACTATCGACGAGCTAGGGACTATCGAGAAAAGGCAAGTTTAGTAACAGAGATGTGTTCCTAACTAAAgttcttattaaattaaatttcacgTCAAAATTAGTAAGCAATATGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU211587 True 3862 lncRNA 0.39 3 9634759 9640636

Neighbor

gene id symbol gene type direction distance location
abhd17c abhd17c,LOC107662262,LOC102793890 coding upstream 44422 9546746 ~ 9590337 (+)
arnt2 arnt2 coding upstream 105519 9418525 ~ 9529240 (+)
fah fah,LOC107662319,LOC107691923,LOC107742310 coding upstream 256208 9350196 ~ 9378551 (+)
zfand6 zfand6 coding upstream 284850 9336647 ~ 9349909 (+)
minar1 kiaa1024,si:cabz01029535.1,LOC107719677,LOC107742309,LOC107662343,LOC107692337 coding upstream 376762 9226447 ~ 9257997 (+)
tlnrd1 mesdc1,LOC107709503,LOC107591291,LOC107691577,LOC107662264,LOC107553753 coding downstream 130138 9770774 ~ 9774454 (+)
il16 il16 coding downstream 151444 9792080 ~ 9822229 (+)
saxo2 saxo2 coding downstream 611089 10251725 ~ 10257578 (+)
lmnl3 LOC108270534,LOC108439631 coding downstream 819485 10460121 ~ 10479323 (+)
cx36.7 LOC108270620 coding downstream 841535 10482171 ~ 10483611 (+)
G178789 NA non-coding upstream 151839 9482335 ~ 9482920 (+)
G178763 mthfs non-coding upstream 301881 9320960 ~ 9332878 (+)
G178764 NA non-coding upstream 324576 9309317 ~ 9310183 (+)
G178760 NA non-coding upstream 333421 9300994 ~ 9301338 (+)
G178761 NA non-coding upstream 335102 9299386 ~ 9299657 (+)
G178817 NA non-coding downstream 109809 9750445 ~ 9750713 (+)
G178834 NA non-coding downstream 141905 9782541 ~ 9782746 (+)
G178839 NA non-coding downstream 183810 9824446 ~ 9907446 (+)
G179085 NA non-coding downstream 433182 10073818 ~ 10074017 (+)
G179212 NA non-coding downstream 616130 10256766 ~ 10260608 (+)
LOC113536578 NA other upstream 1364009 8253421 ~ 8270750 (+)
trnar-ucg_8 NA other upstream 1386671 8248016 ~ 8248088 (+)
trnar-acg_6 NA other upstream 1389735 8244952 ~ 8245024 (+)
trnar-ucg_6 NA other upstream 1391111 8243355 ~ 8243648 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other upstream 2363439 7267831 ~ 7271320 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other downstream 1170034 10810670 ~ 10850923 (+)
G179632 NA other downstream 1455517 11096153 ~ 11098811 (+)
G179643 NA other downstream 1519710 11160346 ~ 11161597 (+)
G179758 psmd1 other downstream 1787977 11428613 ~ 11430897 (+)
G180121 NA other downstream 2414322 12054958 ~ 12055749 (+)

Expression


Co-expression Network