G178914 (arnt2,LOC107395664)


Basic Information

Item Value
gene id G178914
gene name arnt2,LOC107395664
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 9440919 ~ 9443927 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU211728
TGAAGCCATGCTGCACACCTGCTCAGTGAGGAAGGAGGGTTTATAGGCTCCATCAGTGGACGTGTTGCCAGTTCCTCTCATAGACTTCATGTGTGACACGGCCATACGCAGGATGGTGAGCTTGTCGGGTTTCCTGGCCAGCGCACTGCAAGTGGGCACCATGTCCGACAGCTCAGTGATGTACTGCGTCATTTTATTACGCCGGCGTCGCTCAATCTCGCTGTGGTTCTCTCTgcacagagaaacaggaaaaagcTAGTGCTTTATGTGCATGTAATGAAAGATTAATTAAGAACTATAAACAGTGAACAAGTTCTGGGAAAACTCTGATTGTCCTGAGTGTGTTAAATAAGGGGTGAACTCacaatttattacatatttattttatacaaactgGAGTACAAGAAAATCTATAACTGACTGGCAAACTGTTCTCATGTCGATTAGACTTAGCCCCTTGACTTAATGTTGTTTGTATTTAACATCAGTCTACTGTAATGGCCCTGTCTAAAAACGTTGTGTGTTGAATGCTGGTCTACTCCTAAACAAGCTAAAAGGACTTGATAGTATTTTACTGGGGCTGTCACTGTCATAGTCCTTAGCATGGGTCAAAGGCCAGCAAagatcaaaaccaggaagtactattagacacagaacacagaaagcTCAGGAACACAAAAAGCAAGACTttgcaacaaaacaaacaaaacagcaggGTATACGCAGACAACCTAATCAAGGGGTAACACATAACAGGTGAccacaatcaggtaacaaagcaatgacaggacaggggacAGTGACAGGACCAtgacagaaaccaaaacaaaaaccaatATGTTGCTTGCTGCCATGGGAACTgacatacattttatatcatttttgcaTTAGCTGATTTGTAATATGTACAGCAGTTACAGTAAACACTAGCATTACCTTGagcttaacattaaaaaaaaaaacgcatagCACTCTGGAAGAAAACACATCTGCAGTTACCAAAAATGTACTGTCAACTGACCGAACTTTACAGCTCAGTGGTTATGGCTCATGAGTTCAAGCCCTGGCACTGACAATCTGCCACTGccaggcccttgagcaaggcctgtAACACTCCCTTCTCCAGGGGCatcgtatcatggctgacccggatttcttcttcctttcttcttcaATACAGCACGGAACAATCAAACTTACAGGccaaaactaaactaaataccAATAAGGGCTTTAGAGGCAATGCaaccataaataaaataaattcttccTATATTAATGTGACTTGACTTGTGGAGCATGTATAAAGAGTAAGGGTTTGTTTTCTGTAGAATTTATGAAGAGACACTTATAGATTGAGTTAGCTTGATGTAACAGAGCAAGCAAACAGACTTCTGGGATTTTTTATGTCATTCATGTGTTTTGATACCTGTGTTATTCTGGCTGTTGGAGTTTTAGCTACCTCACAACTTGTATGAGCGATACGAGATATGACTAAGACCTGCTTTTCCGACCATACCATCAACTTGCACTGTGTTTGACGGGTATATAGTCTACACTAGTAGCTAATAACGACAATGTTTAAAGCTTTAGAAAACAGACTAAAAGCTATTTTGATGGTTAACAGTAGCTAACTAGCATTACCACATATTAGCAGGCAGACAAATTGAGTCTAAACttaagctaactagctaaacatAAAGAAGTTTAATAttaactgttaactgttaaTAACTAACCATTTAAATTTATTGTACATGTGACAAAGCTTTGCGCATGATCACCGCCACAGGAAGAAAGTAAAGTTAGCCGTTTCAAAGCAGTTTTTGGTTatgactgtatactgtaatgatttatagtctcactatctggtgtcacccagaggatgggttccctttagagtcttgttcttctcaaggtttcttcctcatgtcatctgaGAGAGTTTTTCACCTttgacttgctcattagagatctaaatctacatctggatttctgtaaagctgtgttGTGACAATATatactgttaaaagcgctatatgaataaaaatgagaataGTACCTGTTACTTAGACCGTAGAAGTGAGTGCTGACCCACTGTTTACAATCACTCTGAGATCGTCTTAGATCTTGGCACTAGTTGGCAATTTTTTTGAGAATTTGAAGGCAAAAAATTATCTCGTTAAGTTGGACAATCAATCACCATGTATCTACCCTTATAACACTCATTATCCCTCTTCACTGTTCAGCTCAGATATTCATTAAAGAGTACatagtctttttttaatccctcAAAGTTGAATCATAAAGTGAAGTCCAATAGAGCAAGCAGTATTATAAATCTGTTGTATTAGTCATCTGAGTCTGATAGCGCGACGAGACAGTGGCTTCAGGATGCCTTGCAGTTCACTTTAGGCAAGAAAAATGCACTGCAGAATTGCAATGAATCCAAGAACTAGGGGTTTAAAACAACGCCGATAAGTGTATTCATATCTATTTTTGCTCCAAATAACCATATCTGTATTAGGATTTAAAATTGAAAGTGGGTTTGGCCTAAAATGgaaagtgttttaaaattttctttctttctttccttccttcttcctttcctccttcttcttcttcttcttctttatccTGTAAACCCTTtatatgaaccctaccactataaCCCCAGAAacactaggaaaaaaaacacaagaggtAGAAATGCTAGCACtttcagcatggtgtgtgaattctggttcCAAGAAttcagttcctcaacctcagctacagcACTCGAGTTCATGTTAATAAATGCACtcttaaatatgtttattaatttaaagtttCTCAGATGACTCGCTCATTTTCATGACTTCCTGCCTGGAAGGAGGAGATGGTTGGGCTCAACAGAAGAGCCTCTGTCTCAGTGACAGAATTCTAGCAATGCCACGTCGCCCTACCTGGCATACCGTTCCTTATCAGCGGGCATTTGATCATCAT

Function

symbol description
arnt2 Enables DNA-binding transcription factor activity. Involved in regulation of transcription, DNA-templated; response to hypoxia; and signal transduction. Acts upstream of or within several processes, including animal organ development; neuron differentiation; and positive regulation of transcription, DNA-templated. Predicted to be located in cytoplasm. Predicted to be part of aryl hydrocarbon receptor complex. Predicted to be active in nucleus. Is expressed in several structures, including gut; hatching gland; mandibular arch skeleton; nervous system; and vasculature. Orthologous to human ARNT2 (aryl hydrocarbon receptor nuclear translocator 2).

NR:

description
PREDICTED: stonustoxin subunit beta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU211728 True 2988 lncRNA 0.39 2 9440919 9443927

Neighbor

gene id symbol gene type direction distance location
aldh1a3 aldh1a3,LOC107692006,LOC107742307,LOC107553814,LOC106562593,LOC107755645,LOC107662254 coding downstream 490110 8926812 ~ 8950809 (-)
lrrk1 lrrk1,LOC106593346,LOC106562602 coding downstream 516534 8807587 ~ 8924385 (-)
trnae-uuc_3 NA coding downstream 550221 8890627 ~ 8890698 (-)
plekho2 plekho2 coding downstream 828613 8596180 ~ 8612306 (-)
ankdd1a ankdd1a coding downstream 851567 8572475 ~ 8589352 (-)
mesd mesdc2,LOC107591313,LOC107737020,LOC107693043,LOC107553745,LOC107709495 coding upstream 314725 9758652 ~ 9768100 (-)
stard5 stard5,star5,LOC107691451,LOC107709494 coding upstream 384021 9827948 ~ 9835960 (-)
LOC113536465 tmc3,LOC107553743,LOC107736984,LOC102796631 coding upstream 394072 9837999 ~ 9864785 (-)
mex3b mex3b,mex3d,LOC100534722,LOC107596262,LOC101483145,LOC102192827 coding upstream 624590 10068517 ~ 10073310 (-)
efl1 efl1,eftud1 coding upstream 670156 10114083 ~ 10251340 (-)
G178868 NA non-coding downstream 127269 9312854 ~ 9313650 (-)
G178867 NA non-coding downstream 129016 9310224 ~ 9311903 (-)
G178679 NA non-coding downstream 243114 9197600 ~ 9197805 (-)
G178673 NA non-coding downstream 251005 9187071 ~ 9189914 (-)
G178501 NA non-coding downstream 437067 9003644 ~ 9003852 (-)
G178961 NA non-coding upstream 181357 9625284 ~ 9627183 (-)
G179004 NA non-coding upstream 295604 9739531 ~ 9754379 (-)
G179021 mesdc1,LOC107709503,LOC107591291,LOC107691577,LOC107662264,LOC107553753 non-coding upstream 326891 9770818 ~ 9774409 (-)
G179372 NA non-coding upstream 668101 10112028 ~ 10112242 (-)
G179466 NA non-coding upstream 1067694 10511621 ~ 10512024 (-)
LOC113536412 NA other downstream 33701 9387491 ~ 9407218 (-)
mthfs mthfs,LOC102796869 other downstream 104733 9320966 ~ 9336186 (-)
asb7 asb7,LOC107755647,LOC107662256,LOC107742335 other downstream 445799 8983182 ~ 8995120 (-)
trnar-acg_8 NA other downstream 1193157 8247690 ~ 8247762 (-)
trnar-acg_7 NA other downstream 1194144 8246703 ~ 8246775 (-)
G178942 NA other upstream 78489 9522416 ~ 9523330 (-)
G179035 NA other upstream 369965 9813892 ~ 9815225 (-)
sh3gl3a sh3gl3a,LOC108271217,LOC108439633,LOC107709492,LOC107685195,LOC107591296 other upstream 1042808 10486735 ~ 10523579 (-)
LOC113536673 NA other upstream 1161584 10605511 ~ 10695119 (-)
nppc anfc4 other upstream 1799920 11243847 ~ 11246310 (-)

Expression


Co-expression Network