G178942


Basic Information

Item Value
gene id G178942
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 9522416 ~ 9523330 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU211757
GATTGAGAgatgcagaggccacgcctccttcactgggattaacagatacagaggccatgcctccttcactgggattgagagatgcagaggccacgcctccttcactgggattgagagatgcagaggccacgccttcttcactgggattaacagatacagaggccatgccttcttcactgagatTGAGAGATGCAGAGgccacgcgtCCTTCATTGGGATTGAGAgatgcagaggccacgcctccttcactgggattaacagatacagaggccattcctccttcactgggattgagagatacagaggccatgccttctTCACAGAGATTGAGAgatgcagaggccacgcctccttcactgagattgagagatacagaggccacgcctccttcattgggaTTGAGAGATACAg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU211757 True 411 TUCP 0.53 2 9522416 9523330

Neighbor

gene id symbol gene type direction distance location
aldh1a3 aldh1a3,LOC107692006,LOC107742307,LOC107553814,LOC106562593,LOC107755645,LOC107662254 coding downstream 571607 8926812 ~ 8950809 (-)
lrrk1 lrrk1,LOC106593346,LOC106562602 coding downstream 598031 8807587 ~ 8924385 (-)
trnae-uuc_3 NA coding downstream 631718 8890627 ~ 8890698 (-)
plekho2 plekho2 coding downstream 910110 8596180 ~ 8612306 (-)
ankdd1a ankdd1a coding downstream 933064 8572475 ~ 8589352 (-)
mesd mesdc2,LOC107591313,LOC107737020,LOC107693043,LOC107553745,LOC107709495 coding upstream 235322 9758652 ~ 9768100 (-)
stard5 stard5,star5,LOC107691451,LOC107709494 coding upstream 304618 9827948 ~ 9835960 (-)
LOC113536465 tmc3,LOC107553743,LOC107736984,LOC102796631 coding upstream 314669 9837999 ~ 9864785 (-)
mex3b mex3b,mex3d,LOC100534722,LOC107596262,LOC101483145,LOC102192827 coding upstream 545187 10068517 ~ 10073310 (-)
efl1 efl1,eftud1 coding upstream 590753 10114083 ~ 10251340 (-)
G178914 arnt2,LOC107395664 non-coding downstream 78489 9440919 ~ 9443927 (-)
G178868 NA non-coding downstream 208766 9312854 ~ 9313650 (-)
G178867 NA non-coding downstream 210513 9310224 ~ 9311903 (-)
G178679 NA non-coding downstream 324611 9197600 ~ 9197805 (-)
G178673 NA non-coding downstream 332502 9187071 ~ 9189914 (-)
G178961 NA non-coding upstream 101954 9625284 ~ 9627183 (-)
G179004 NA non-coding upstream 216201 9739531 ~ 9754379 (-)
G179021 mesdc1,LOC107709503,LOC107591291,LOC107691577,LOC107662264,LOC107553753 non-coding upstream 247488 9770818 ~ 9774409 (-)
G179372 NA non-coding upstream 588698 10112028 ~ 10112242 (-)
G179466 NA non-coding upstream 988291 10511621 ~ 10512024 (-)
LOC113536412 NA other downstream 115198 9387491 ~ 9407218 (-)
mthfs mthfs,LOC102796869 other downstream 186230 9320966 ~ 9336186 (-)
asb7 asb7,LOC107755647,LOC107662256,LOC107742335 other downstream 527296 8983182 ~ 8995120 (-)
trnar-acg_8 NA other downstream 1274654 8247690 ~ 8247762 (-)
trnar-acg_7 NA other downstream 1275641 8246703 ~ 8246775 (-)
G179035 NA other upstream 290562 9813892 ~ 9815225 (-)
sh3gl3a sh3gl3a,LOC108271217,LOC108439633,LOC107709492,LOC107685195,LOC107591296 other upstream 963405 10486735 ~ 10523579 (-)
LOC113536673 NA other upstream 1082181 10605511 ~ 10695119 (-)
nppc anfc4 other upstream 1720517 11243847 ~ 11246310 (-)
G179803 ncl other upstream 1885762 11409092 ~ 11420046 (-)

Expression


Co-expression Network