G179035


Basic Information

Item Value
gene id G179035
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 9813892 ~ 9815225 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU211855
TTACAGAGAAGCCCTTCTCAGTGCTGTCTGGTGCCAGTGAGACTAAGGTCTCAGACAGAGAAATGTCTTCCTCTGTGGGGTTATGGTGAGGGGATCCAGATGACGCACTCCATGGGTTACCAAGCTTTAGGCATGGGGACTGAGGAAGGGATTGCATGGAACGCATCAGGGCATGGGACACTTGGTTGCTGAATGACAGGATGATCTCTAGGGTTTCCCCTTCCAGTCCACCTTGGCCATGGGCATCTGACAAAGAGGTGGTGTTCAGGGGTAGACTCCTGGTTCTTAAGCTTGCAGTGTGACTGCCGTGGCCCTCCAATGAAGATCTATTTTGTGAAGGAGGATCTTTAGAACTGCTGGACCTTCTAGGGCAGTGATCAATGTGGGGACTTGTTTCCTTCTCATCCTCCAAAGAAGAAGGAATCTCTACTGGAGGGCTTGCGGAACCCTCAGTCGGTTTTGTGGCTGCAGTTGTATCATCTGTTTTTGGGGTCTCATTTTGGAAATCTGTTATTTTTGAGGTTGCTTGTTCTTCTTCAGGAAATGCTTTGGTGGTGGTGGCTGAATCTATCACTGAAGAAGGTTTGTCACTGTCATGTGTGTTAATCACAGTGGTTCTACTTTTCCATGTGCTGCTGGTCTCTACAGGCTGAGCTTTCTCAAACCTAGCTGGACTTTTTTCCATCTGAGGAAGCGATGAGGATGGAGCCGATCTTCTGCTTGTCCTCTCTGCTCCATCAGTGTTAGAAAAGGTCTCAAATGAGCTGAGCTTTTGTTTGAAAGATAGATTTGCTGCTGATGAGGTAGCCCTCAGACTAACTCCAAAGGTCTTTCCAGTATCTTGgctttttgattgatttttaaagGCCTCAGCTGGCGACCTCCCAGACTTAATGCTTCTAAGACTTTGGCGTACCCAAGCAGGTTTTGGAGCCACTGGAGGCCCCTTTTTAACATCAGCAGTTTCCTCTGGCTTTGAGCTGGAGATGGGGTCTGTGGTCTCTGAGACTGTGCCATTTATCTCATTATTCCCATTATGGTCACTCATGATTTTTCGATGGTTCAGACGCTTCTCAAGACTGTCTGTTAGCCTCACCCAAGGGTCAACTGGCTGATCAGAGTTCAACTCCACACAGTCCTGACGTCTCAGACTGGTTCTCCTGGTTGGACTGCACGGGTTGTTGGGAGACTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU211855 True 1193 TUCP 0.48 2 9813892 9815225

Neighbor

gene id symbol gene type direction distance location
mesd mesdc2,LOC107591313,LOC107737020,LOC107693043,LOC107553745,LOC107709495 coding downstream 45792 9758652 ~ 9768100 (-)
aldh1a3 aldh1a3,LOC107692006,LOC107742307,LOC107553814,LOC106562593,LOC107755645,LOC107662254 coding downstream 863083 8926812 ~ 8950809 (-)
lrrk1 lrrk1,LOC106593346,LOC106562602 coding downstream 889507 8807587 ~ 8924385 (-)
trnae-uuc_3 NA coding downstream 923194 8890627 ~ 8890698 (-)
plekho2 plekho2 coding downstream 1201586 8596180 ~ 8612306 (-)
stard5 stard5,star5,LOC107691451,LOC107709494 coding upstream 12723 9827948 ~ 9835960 (-)
LOC113536465 tmc3,LOC107553743,LOC107736984,LOC102796631 coding upstream 22774 9837999 ~ 9864785 (-)
mex3b mex3b,mex3d,LOC100534722,LOC107596262,LOC101483145,LOC102192827 coding upstream 253292 10068517 ~ 10073310 (-)
efl1 efl1,eftud1 coding upstream 298858 10114083 ~ 10251340 (-)
adamtsl3 adamtsl3,LOC107591308,LOC107736989,LOC107685222,LOC107662271 coding upstream 443082 10258307 ~ 10452771 (-)
G179021 mesdc1,LOC107709503,LOC107591291,LOC107691577,LOC107662264,LOC107553753 non-coding downstream 39483 9770818 ~ 9774409 (-)
G179004 NA non-coding downstream 59513 9739531 ~ 9754379 (-)
G178961 NA non-coding downstream 186709 9625284 ~ 9627183 (-)
G178914 arnt2,LOC107395664 non-coding downstream 369965 9440919 ~ 9443927 (-)
G178868 NA non-coding downstream 500242 9312854 ~ 9313650 (-)
G179372 NA non-coding upstream 296803 10112028 ~ 10112242 (-)
G179466 NA non-coding upstream 696396 10511621 ~ 10512024 (-)
G179469 NA non-coding upstream 699471 10514696 ~ 10515201 (-)
G179478 NA non-coding upstream 746178 10561403 ~ 10563452 (-)
G179485 NA non-coding upstream 759311 10574536 ~ 10576032 (-)
G178942 NA other downstream 290562 9522416 ~ 9523330 (-)
LOC113536412 NA other downstream 406674 9387491 ~ 9407218 (-)
mthfs mthfs,LOC102796869 other downstream 477706 9320966 ~ 9336186 (-)
asb7 asb7,LOC107755647,LOC107662256,LOC107742335 other downstream 818772 8983182 ~ 8995120 (-)
trnar-acg_8 NA other downstream 1566130 8247690 ~ 8247762 (-)
sh3gl3a sh3gl3a,LOC108271217,LOC108439633,LOC107709492,LOC107685195,LOC107591296 other upstream 671510 10486735 ~ 10523579 (-)
LOC113536673 NA other upstream 790286 10605511 ~ 10695119 (-)
nppc anfc4 other upstream 1428622 11243847 ~ 11246310 (-)
G179803 ncl other upstream 1593867 11409092 ~ 11420046 (-)
LOC117598430 NA other upstream 1676482 11491707 ~ 11503962 (-)

Expression


Co-expression Network