G179212


Basic Information

Item Value
gene id G179212
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 10256766 ~ 10260608 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU212048
tatagcataaAGAATTCCAGACAGTCCCCAATCAAAACTCTCACCATCCCAAACATGAACGGTTTTACACATCAGTAGCCAAATATTGTtgtatatctgtatttatttcagcACATGGTTTGTGTATCTATTCAAACATTTCAAACGGTAATTAAATCGCATGCTTTTAAATACAGAAGGACATGGTAGTCAACTCATGGATTATCCACGTGAATAACTGATAAGGTTTTCTGTAGTCTTAAATATGGATTACAATGTAAACTACACTAGCAGGTAAGAAAATAAGTCCCAAATCTCTACACTCAATGTACAATATTGCacttaaaaaacacattatgtaCAAGAATTAATTTACAATGCAGCACATTGgttgaagacacacacacacacacatttgaaagGTGTAGCAACTGGAGACTCAAGGTTTTATGACGTAAAGACTTTTCACTCCTACATTAAAATGATCTATATCTTCATAACACATGCATAAGCAAGGAATAGTGGTTTTAGAATAAGACATGAATATCTATGAACAGCAGCTAATGTAAGTTTTTATACATTACACGCCCCAATTGTTGTGATTATGGTGCATGTGTGAAAAATAAGGCATATAAGATTGTCATTATGTAGTCTCAGTTTCAGATGTTCTGCTATGGGCCACAGAATGTCTATCtgttgtacacttttctggccaccaGCTTCAGAATCTTTATGGTTGAAATCTGATTATTGGCTGTCAGCACTTCTGTATATTTGGACTTCCATGCACCGGTTTTCAGCTGGAAAGTGAGCTTctgaaaataataacacaatgaGCTTTTCAGAGTAAGtcactggactgaaaaaaatatctttaaaatttattaaaggagcagtttgtggTGAGTAAATGAGACTCATGTTTGCTGATGAGCTACAGGGAAAGGTATGTGGTGGATCATTTATGGAACCAGCGTCCATGTGCAAgagatttatttacaaaatccAAAGCCAAACAATGTTCAAATTGCAAATAGAAATTCAGACTCTGTTTAATCATAAAACGAGCCAGACTCTCCTGAGAATGCCAGAAGTCTGTCTTGAGATACTTATATCCTCAGTATTTTCAAGATCTTTGACGTAAGCCATGCATACTGTTGAGCAGTTCTGGACAGTCCCTATCAAAAGAGTCTTGTGagcaaatggctgtggtataagaggaataaaacacttcagggcttactgttacaggaaaacattGCACTTTGGGGTGctaatggattattttcctcgAACAGCATgctccatcatgttttattgaaCTAAAAGCTTACAGAGTTAGACCTGCTTCCTTATTAACTGTGATAGTTATTCTACTTTTAAGAGCAGTGATAAGTGAGGTGGAGGCTGGCTATTTGATGCAGCTACTATTAGAATATTATGATTAGTTTTGATTGCATAAAAACACAGTATTTTTAATGTGAGAAAATGGGTCACTTCTTATCCTTATAAATTTACATTCCTTGTTTGTAACTACAGACCTTTTCTATGCATACCTTCTTGGACTGTGATTCTCTGTGGTTACTTGATTTCATGGGGAAAATGTCATAAGCTGCTGTTCTTATATACCCAGACATCATTCTATAAGCGTTTTATTCACTGCTAATATGTGCGTTATGAAGTCAATATTTAGATAaccttcaaataaagtgttaccctTAAAATGCTTTCAGATTTTCAGCTACTGGAAGTACCCTATGTACACTTCAGCTGTACCTATTTTAGCCTCCCTTCACACATGTGAATGGTCCAGTATTCTCTGCTTCTCATCCTGATGATTAAATATAGAGCAAAACACATTCTTATAAATTATTCCACACATGATGCCAATAATGAACTTTATATAATGATGAGAGGAGAGAGCTGAATTAGTGCCGTTTTCTCTGTCAGCGGCAAATTGCCAGTGCACACCCATAACTCGCTTCAGCCTAGATAAAGGCTCTTTAGTCCAAATTACATAGAGTATCCACTTAAACCTGGCCGTGTCCCAAAAATGCCACTCTCTCctggagttcttccacttcagaTTTTTTCCACATGTGCTTGGATTGGAAAGAAGAGCAGTTTTCAGGAGTAAGTTGTAATGTTGTAGAAGCTTGAGATGTTCCATCAGCCCGCACTAGATAGTGCCCGAGTCCTCTGAGCAGGACTTGCAGCATCTCTGTGTATACAGTTCAATGGGACACAACCTGAGGCGTTTCACCACTGCGCAGTAATGTGTTGTGTCCTT

Function

GO:

id name namespace
GO:0001558 regulation of cell growth biological_process
GO:0040008 regulation of growth biological_process
GO:0031214 biomineral tissue development biological_process
GO:0016049 cell growth biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU212048 True 2269 lncRNA 0.37 2 10256766 10260608

Neighbor

gene id symbol gene type direction distance location
il16 il16 coding upstream 434537 9792080 ~ 9822229 (+)
tlnrd1 mesdc1,LOC107709503,LOC107591291,LOC107691577,LOC107662264,LOC107553753 coding upstream 482312 9770774 ~ 9774454 (+)
cemip cemip,LOC107591290,LOC107691638,LOC107662322,LOC107553744 coding upstream 502320 9625189 ~ 9754446 (+)
abhd17c abhd17c,LOC107662262,LOC102793890 coding upstream 666429 9546746 ~ 9590337 (+)
arnt2 arnt2 coding upstream 727526 9418525 ~ 9529240 (+)
lmnl3 LOC108270534,LOC108439631 coding downstream 199513 10460121 ~ 10479323 (+)
cx36.7 LOC108270620 coding downstream 221563 10482171 ~ 10483611 (+)
LOC113536420 NA coding downstream 294677 10555285 ~ 10563493 (+)
rubcn rubcn coding downstream 304651 10565259 ~ 10579393 (+)
tctex1d2 tctex1d2 coding downstream 357204 10617812 ~ 10623164 (+)
G179085 NA non-coding upstream 182749 10073818 ~ 10074017 (+)
G178839 NA non-coding upstream 349320 9824446 ~ 9907446 (+)
G178834 NA non-coding upstream 474020 9782541 ~ 9782746 (+)
G178817 NA non-coding upstream 506053 9750445 ~ 9750713 (+)
G178798 NA non-coding upstream 616130 9634759 ~ 9640636 (+)
G179425 NA non-coding downstream 226089 10486697 ~ 10491773 (+)
G179426 NA non-coding downstream 231425 10492033 ~ 10492469 (+)
G179427 NA non-coding downstream 236040 10496648 ~ 10497140 (+)
G179428 NA non-coding downstream 236880 10497488 ~ 10497712 (+)
LOC113536738 NA non-coding downstream 522517 10783125 ~ 10784114 (+)
LOC113536578 NA other upstream 1986016 8253421 ~ 8270750 (+)
trnar-ucg_8 NA other upstream 2008678 8248016 ~ 8248088 (+)
trnar-acg_6 NA other upstream 2011742 8244952 ~ 8245024 (+)
trnar-ucg_6 NA other upstream 2013118 8243355 ~ 8243648 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other upstream 2985446 7267831 ~ 7271320 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other downstream 550062 10810670 ~ 10850923 (+)
G179632 NA other downstream 835545 11096153 ~ 11098811 (+)
G179643 NA other downstream 899738 11160346 ~ 11161597 (+)
G179758 psmd1 other downstream 1168005 11428613 ~ 11430897 (+)
G180121 NA other downstream 1794350 12054958 ~ 12055749 (+)

Expression


Co-expression Network