G179372


Basic Information

Item Value
gene id G179372
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 10112028 ~ 10112242 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU212223
tataattatatttaaggTTGTGTaatgtccacgaaacaagttattACCTATTCTCACTTTTTACATCACAGTATAATGActacagtcatttcctcactttTTCTTGAAGctacatctttacctctgactgttacaaagcagtaacacctgagactccttctgtaagtGTTAAACATCTTCctacagaaagtttcaccacATCAACTACATTTTTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU212223 True 215 lncRNA 0.33 1 10112028 10112242

Neighbor

gene id symbol gene type direction distance location
mex3b mex3b,mex3d,LOC100534722,LOC107596262,LOC101483145,LOC102192827 coding downstream 38718 10068517 ~ 10073310 (-)
LOC113536465 tmc3,LOC107553743,LOC107736984,LOC102796631 coding downstream 247243 9837999 ~ 9864785 (-)
stard5 stard5,star5,LOC107691451,LOC107709494 coding downstream 276068 9827948 ~ 9835960 (-)
mesd mesdc2,LOC107591313,LOC107737020,LOC107693043,LOC107553745,LOC107709495 coding downstream 343928 9758652 ~ 9768100 (-)
aldh1a3 aldh1a3,LOC107692006,LOC107742307,LOC107553814,LOC106562593,LOC107755645,LOC107662254 coding downstream 1161219 8926812 ~ 8950809 (-)
efl1 efl1,eftud1 coding upstream 1841 10114083 ~ 10251340 (-)
adamtsl3 adamtsl3,LOC107591308,LOC107736989,LOC107685222,LOC107662271 coding upstream 146065 10258307 ~ 10452771 (-)
LOC113536710 NA coding upstream 414791 10527033 ~ 10530371 (-)
rnf13 rnf13 coding upstream 432525 10544767 ~ 10555198 (-)
LOC113536758 LOC108270621,LOC108410683,LOC101070468,LOC103028064 coding upstream 468451 10580693 ~ 10592964 (-)
G179021 mesdc1,LOC107709503,LOC107591291,LOC107691577,LOC107662264,LOC107553753 non-coding downstream 337619 9770818 ~ 9774409 (-)
G179004 NA non-coding downstream 357649 9739531 ~ 9754379 (-)
G178961 NA non-coding downstream 484845 9625284 ~ 9627183 (-)
G178914 arnt2,LOC107395664 non-coding downstream 668101 9440919 ~ 9443927 (-)
G178868 NA non-coding downstream 798378 9312854 ~ 9313650 (-)
G179466 NA non-coding upstream 399379 10511621 ~ 10512024 (-)
G179469 NA non-coding upstream 402454 10514696 ~ 10515201 (-)
G179478 NA non-coding upstream 449161 10561403 ~ 10563452 (-)
G179485 NA non-coding upstream 462294 10574536 ~ 10576032 (-)
G179487 NA non-coding upstream 466178 10578420 ~ 10579460 (-)
G179035 NA other downstream 296803 9813892 ~ 9815225 (-)
G178942 NA other downstream 588698 9522416 ~ 9523330 (-)
LOC113536412 NA other downstream 704810 9387491 ~ 9407218 (-)
mthfs mthfs,LOC102796869 other downstream 775842 9320966 ~ 9336186 (-)
asb7 asb7,LOC107755647,LOC107662256,LOC107742335 other downstream 1116908 8983182 ~ 8995120 (-)
sh3gl3a sh3gl3a,LOC108271217,LOC108439633,LOC107709492,LOC107685195,LOC107591296 other upstream 374493 10486735 ~ 10523579 (-)
LOC113536673 NA other upstream 493269 10605511 ~ 10695119 (-)
nppc anfc4 other upstream 1131605 11243847 ~ 11246310 (-)
G179803 ncl other upstream 1296850 11409092 ~ 11420046 (-)
LOC117598430 NA other upstream 1379465 11491707 ~ 11503962 (-)

Expression


Co-expression Network