Gene
RNA
| Item | Value |
|---|---|
| gene id | G179427 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047605.1 |
| NCBI id | CM018551.1 |
| chromosome length | 26640196 |
| location | 10496648 ~ 10497140 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU212281 | True | 493 | lncRNA | 0.43 | 1 | 10496648 | 10497140 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| cx36.7 | LOC108270620 | coding | upstream | 13037 | 10482171 ~ 10483611 (+) |
| lmnl3 | LOC108270534,LOC108439631 | coding | upstream | 17325 | 10460121 ~ 10479323 (+) |
| saxo2 | saxo2 | coding | upstream | 239070 | 10251725 ~ 10257578 (+) |
| il16 | il16 | coding | upstream | 674419 | 9792080 ~ 9822229 (+) |
| tlnrd1 | mesdc1,LOC107709503,LOC107591291,LOC107691577,LOC107662264,LOC107553753 | coding | upstream | 722194 | 9770774 ~ 9774454 (+) |
| LOC113536420 | NA | coding | downstream | 58145 | 10555285 ~ 10563493 (+) |
| rubcn | rubcn | coding | downstream | 68119 | 10565259 ~ 10579393 (+) |
| tctex1d2 | tctex1d2 | coding | downstream | 120672 | 10617812 ~ 10623164 (+) |
| LOC113536756 | LOC108271257 | coding | downstream | 153118 | 10650258 ~ 10674052 (+) |
| LOC113536667 | armc9 | coding | downstream | 616504 | 11113644 ~ 11160226 (+) |
| G179426 | NA | non-coding | upstream | 4179 | 10492033 ~ 10492469 (+) |
| G179425 | NA | non-coding | upstream | 4875 | 10486697 ~ 10491773 (+) |
| G179212 | NA | non-coding | upstream | 236040 | 10256766 ~ 10260608 (+) |
| G179085 | NA | non-coding | upstream | 422631 | 10073818 ~ 10074017 (+) |
| G178839 | NA | non-coding | upstream | 589202 | 9824446 ~ 9907446 (+) |
| G179428 | NA | non-coding | downstream | 348 | 10497488 ~ 10497712 (+) |
| LOC113536738 | NA | non-coding | downstream | 285985 | 10783125 ~ 10784114 (+) |
| G179558 | NA | non-coding | downstream | 307965 | 10805105 ~ 10805311 (+) |
| G179561 | NA | non-coding | downstream | 311896 | 10809036 ~ 10809271 (+) |
| G179572 | NA | non-coding | downstream | 366509 | 10863649 ~ 10863850 (+) |
| LOC113536578 | NA | other | upstream | 2225898 | 8253421 ~ 8270750 (+) |
| trnar-ucg_8 | NA | other | upstream | 2248560 | 8248016 ~ 8248088 (+) |
| trnar-acg_6 | NA | other | upstream | 2251624 | 8244952 ~ 8245024 (+) |
| trnar-ucg_6 | NA | other | upstream | 2253000 | 8243355 ~ 8243648 (+) |
| rpl37a | rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 | other | upstream | 3225328 | 7267831 ~ 7271320 (+) |
| LOC113536516 | ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 | other | downstream | 313530 | 10810670 ~ 10850923 (+) |
| G179632 | NA | other | downstream | 599013 | 11096153 ~ 11098811 (+) |
| G179643 | NA | other | downstream | 663206 | 11160346 ~ 11161597 (+) |
| G179758 | psmd1 | other | downstream | 931473 | 11428613 ~ 11430897 (+) |
| G180121 | NA | other | downstream | 1557818 | 12054958 ~ 12055749 (+) |
