G179428


Basic Information

Item Value
gene id G179428
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 10497488 ~ 10497712 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU212282
CTTTTAAAGAgtccaaaagtaattggacagttgactgctcagctgttccatggacaggtgtgtgttattccctcattatttcatttattagcaAGCTCTAGTGAGATCAAGTGTTTttaagtgtggcatttgcattctGTTGcagttaactctcaatatgaagtccaaagagctgtcactgccagtaaAGCAGGCCATCATTAGGCCATATCacctatttggtac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU212282 True 225 lncRNA 0.40 1 10497488 10497712

Neighbor

gene id symbol gene type direction distance location
cx36.7 LOC108270620 coding upstream 13877 10482171 ~ 10483611 (+)
lmnl3 LOC108270534,LOC108439631 coding upstream 18165 10460121 ~ 10479323 (+)
saxo2 saxo2 coding upstream 239910 10251725 ~ 10257578 (+)
il16 il16 coding upstream 675259 9792080 ~ 9822229 (+)
tlnrd1 mesdc1,LOC107709503,LOC107591291,LOC107691577,LOC107662264,LOC107553753 coding upstream 723034 9770774 ~ 9774454 (+)
LOC113536420 NA coding downstream 57573 10555285 ~ 10563493 (+)
rubcn rubcn coding downstream 67547 10565259 ~ 10579393 (+)
tctex1d2 tctex1d2 coding downstream 120100 10617812 ~ 10623164 (+)
LOC113536756 LOC108271257 coding downstream 152546 10650258 ~ 10674052 (+)
LOC113536667 armc9 coding downstream 615932 11113644 ~ 11160226 (+)
G179427 NA non-coding upstream 348 10496648 ~ 10497140 (+)
G179426 NA non-coding upstream 5019 10492033 ~ 10492469 (+)
G179425 NA non-coding upstream 5715 10486697 ~ 10491773 (+)
G179212 NA non-coding upstream 236880 10256766 ~ 10260608 (+)
G179085 NA non-coding upstream 423471 10073818 ~ 10074017 (+)
LOC113536738 NA non-coding downstream 285413 10783125 ~ 10784114 (+)
G179558 NA non-coding downstream 307393 10805105 ~ 10805311 (+)
G179561 NA non-coding downstream 311324 10809036 ~ 10809271 (+)
G179572 NA non-coding downstream 365937 10863649 ~ 10863850 (+)
G179628 NA non-coding downstream 571877 11069589 ~ 11069817 (+)
LOC113536578 NA other upstream 2226738 8253421 ~ 8270750 (+)
trnar-ucg_8 NA other upstream 2249400 8248016 ~ 8248088 (+)
trnar-acg_6 NA other upstream 2252464 8244952 ~ 8245024 (+)
trnar-ucg_6 NA other upstream 2253840 8243355 ~ 8243648 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other upstream 3226168 7267831 ~ 7271320 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other downstream 312958 10810670 ~ 10850923 (+)
G179632 NA other downstream 598441 11096153 ~ 11098811 (+)
G179643 NA other downstream 662634 11160346 ~ 11161597 (+)
G179758 psmd1 other downstream 930901 11428613 ~ 11430897 (+)
G180121 NA other downstream 1557246 12054958 ~ 12055749 (+)

Expression


Co-expression Network