sh3gl3a (sh3gl3a,LOC108271217,LOC108439633,LOC107709492,LOC107685195,LOC107591296)


Basic Information

Item Value
gene id sh3gl3a
gene name sh3gl3a,LOC108271217,LOC108439633,LOC107709492,LOC107685195,LOC107591296
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 10486735 ~ 10523579 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU212321
ATTAAATTAGTGAGCAAAATAATGAGCCTTGAAAGACATCTCTGTTTCTTATCCTGCTGAATAGGACAGGTTTTATCTAAGGAGCACAAACGCTACCTAGGCAATGCAAATTTTTATGTGTGTTGATTATTGAAACATATTGTAGAACTGATAATCAGCACACTCTTAATCCACACTTGGGCCACATTTGCTTTCCAGGAAACCAGTTGCCCAGTGGAACACTTTAacagtattttacattttacttgttgccatattatatgattattgcAGGTTTGACTAAGATGGAAAAGTTGACATTGTTTCAGTATTGACCAGCGGcacatttttacagtattttaaagcTTCTTGTTGCCAAgtcattttattgcttttgCTTGAATACAAAGTGAATAGGAATGAGACAAGCTTAAGCAGGCCTTAATGTGAAATCCTTAAGCTGTGTTGCTCCATCTGCTGAGCTTGAATTAACTTTGTCCGGTAAAACATTAGACTGTTTATTATCATATAGGAGTCCAGAGAGGCGatgcattacatttttattgtccCCTATGAAAACATTCATGCTTAAAGCTTATAGCTAGTTTATCCCGCAGTTAGACATAGAAACTGTCAAAATGTAGAACAAAACcaaattaatgaaatgtattttgttacattttgatATTCTGTTTTTCACCTATCTATATTAGTATTGCAAACATGCTTTAGAGCTACTACTAAAGCACATTTTGGGTCTTGTTTACCATTCCTcatccttatttatttatactttttgaCTAACGTTCCTGTAAATTCCTGAtgcaaacaaaccaaatgtgGCATTAACTAGACTAATTATTTTTCACTTCCAGATCAGTCGTTtaaatgggacagaataataacaataacgcAGGGCCTCTCTGGACCTGTGTAAAACACTACTGACCCCTCtacctttacacattttgtccTGTAGCTTTCCAGTCATTTTTGTCACTACAGTACTCGTTTCAGAGAGAGGCATGTGGacc
>XM_026930581.2
TAGTGCACACTACAGCACTCAGTAGTCAGCACTCCACTACAGCACTCAGTACTCAGCACCGACTACAACCCTGAGGCTCCGACTAGGATTTTCTCCCGATAGCTGAAGGATTATTTTGTGTCTTTTCCTCATCATTTTGACTTTATTCTACCTCTGTTTCGACTTTTGCCCCATTTTCTCTGAGGATGTCGGTGGCGGGTTTGAAGAAGCAGTTTCATAAAGCCAGTCAGttacTGAGTGAGAAGATAAGTGGTGCTGAAGGGACAAAGCTCGATGAGGATTTCATGGAGATGGAGCGGAAAATAGATGTCACCAACAAGTCTGTGTTTGAGCTCCTAACCAAAACCACAGAATACCTCCAGCCAAACCCAGCATCACGAGCCAAACTGGGGATGCTGAACACCATGTCAAAGATCAGAGGACAGGTAAAGACCACTGGTTACCCACAGACAGAGGGGCTTCTGGGAGATTGCATGCTCCGGTACGGCCGTGAACTTGGAGACGACTCTACGTTtgGTTGTGCTCTGTTGGATGTGGGCGAGGCTATGAAACAAATGGCCGATGTTAAAGACTCGCTCGATATCAACGTGAAGCAGAACTTCATCGATCCGCTGCAGACACTGCAGGACAAAGACCTGAAGGAGATTGGGCATCATCTAAAGAAGCTGGAGGGACGGCGGTTAGATTACGACTATAAGAAGAAGCGTCAAGGCAAGATTGCTGATGATGAAATCAAGCAGGCTGTGGAGAAGTTTGTGGAGTCCAAGGAACTTGCCGAGAGGAGCATGTTCAACTTTTTAGAAAATGACGTGGAGCAGGTGAGTCAGCTAGCAGCTCTGATCGAGGCAGCACTGGAGTATCACCGTCAATCCAGCGACATCCTGGAGGAACTCAATGGCAAATTACAGAGCAGGATAAACACAGCAAGCTGTAAACCTAAGAAAGAGTTCAAGCCAAAGTCCATCATGTCCAGCCTGGAGGCCATCAACAGCAATCAGCATAATGGTGTCTCCTACACTTCCTCTCTAAAATCCACAGATATTCAAGTGAATCACAGTGTAAATGGAAAAATTGATTACATCAGCCATCCACCTCCCATCAGTCCAGCGTGGTCCGAAAGCCCCAGTGTGAACAGTCAGACGGAGCTGCACATGGACCAGCCGTGCTGCCGCTCGCTGTACGACTTCGAACCTGAAAACGAAGGGGAGCTCGGCTTTAAGGAAGGAGACATCATCATCCTTACCAATCAGATCGACGAGAACTGGTACGAAGGGATGATCAACGGCGAGTCAGGCTTCTTTCCCATCAACTACGTCGAGGTCCTAGTTCCCCTACCGCAATGAGGCTAGTAACACTGACTCTGTACAAGAGACACAATCTATGGAAGCTTCATCttttactgctttatttttcagCATCTAAGTGTAGTGAGTCAAGACAACTGGAATTGAATTATAATCTTGATGAGTTGAGAAACGTCTCAAAAGTTAGAACAAGTCCAGTCACCTTGATTcattatttctagacatttagTGATGGATGCCTGAAAAACCTGGTAGgctttatttttcagtatttatttctcttttatacGCAGTATCCTGTGTGCGCTTCTGATTTAGCCTTTGGCATATGTTCAGCACTCCTTTTTTTCAGCTATGTGGATGGATAGCTccctattttttgttttgtaattttttttattctggtttGTATGTGGTTTAGAGGTTTGAGTGCCTGCACTGAGCTTACATGCCATCGAAACACAATTGATAAAAATGTGAGTATCTGTACTGCTACTCATGGGAATGTTTATCTCCCCAAGTACTTAATCTCTCTCTTGTGCACtggctctttttttctgtttacatgtgacttacTGTGATTATCTGGAATCATGACAGCAGTAACAAATGTTATATCAGAAACGATGCAGACATTGAAGTACAGGGTGGGCGATgtggcaaaaatatcacatcacaatACTTTTCTCATAATGCACAGTATTTATTGTCACTGAGGTTTTGTTCAAAATCTTGCCAGCAGCAAATtaagagaaaatgaaacaattggttaaaaaaaggaTAATCAGCTACCAGTTAGCTCCGTGTTACTGTAACAGTAGAGAGAGTAGGTCAGTAAAAGGCAGGGGTTTTCAGCCTGGTTTGCACAGTGACCCCATTTTAAAGGACCAAAATTCTCaccataaataaacaaaatgtgcaaatatctgttaatattataaacatgcactACCACTCTATAAGATCACTTAAAGTTTGTTAATCTGTGGAGAGCGTAGCCAGAGCACACTGCTGCTGCAGTAGGCTACAGAAAACAGACTGCAGTATCGCCCATGTGTTGTTTAGATTCTGGTCAGACGCtgcaaaatatataataaatattgtattttgtagtgTTCCTAACTAGGAAGTATGACGATGCAGTggaagatatttttattttaaatagtggTTCTGCATGTCAAGGGTCTGTTGTGAAGGCCACTTTGTTTAACATTGCATTGGACGTTGTGTGAAAAGCTAATGGAATTAGAATCATTATATGACGTTAATTTGACGTTCAATTCTTATTTCAAAATCATTCCATAAATCAAGTTCATGTGCATAGAGCTACATTATAAATTTTGGTTGGTAAAAATCTCCTGCGACCCCATCTGACCCCAAGGTTGAGAGCTGATGGTGTAAGGACTATTGTATAATATGGTATTTCTCAATCCTGGTCATGGAGTATCACTGCCCTACacgtttttctgtttttgtgtttgtttcactTGGAGTCTTTTGTAGTAAATCTGTTCTTCATCAGTGTCATGCAGACTGGCTAATGTTGTTTAGGACACATGGGATCTAATGGTTTGGTATTAACTGTCTTCATGCTGTGAGACATAATGTTTACACTCAGTCATCATAACTTTTATGATCATATCTAATCAGCCAGATGCTAACTCGCAGTTCTGGTACATGTTCCTGAAAACACAGGCCTTACTGCAATTCTAAATATGGGTCAAAGAAGAGAAATTCAGGAATAAATCTGTATTAAATCCACATACACTTGGAAACAGTATAtcacaacatatttttatttggcTATCACATTGTCACATCGCCCATCTCTGCAAACTTCTCTCACTCCCTGAAGTGCTTCTTTATTTTGAGATTGTGGTCATATTGCACTAAATGCTTTAGAATCAACAGTCAGTCACATGGCACATGGATCTCCCATTTGCACTTTCTACTGAATCTCTCTGCCACGCCATGAGCACGAATTGACATCAGCCTGTCTCAGTCAGTAaacatatagaaatatatagagACATCAATATCCAGACCGACTGTTCACCTGGGAGCGAATATTTTCCCAGCATCATACACTGAATGAAgttacaaaaccaaaaaaatgcatcatgtTTCCAGTGGTCGAGTTATTTGCATACAAAGCTGTGAAATGCTTTTCATGCCTTGCTTGATTGTTTTTAAACTGACATGTCAAGACATCTTCTGCACGGATTGAAGTCCTGATTAGCCAAATGCCGATATTACAGTTTCATATCACGGTAATTGTTGATCCATGACAATATTGCATTTAAAACATCACTAATGATAAAATACAAGACAAACTATATAAGACAAACTAGCTTGTAATTCGGAATAACACTGAATAATTTTTGGCTTGTTTGCATAACAGTACAACaattttagattaaataaaatgtgtaaagacaaatataaaaatcttataATAACTGTTGAATATTTCGCTGTATATTGTACCTGATTATCGGCACATTACTAGTCCTgatattaccaaaaaaaaaaagtggtaaatgactgtATTCTTGCAATGCCACAGAACTACGCTGTGTAGTTTAATAGCcatttggatttttattttaacttatgATGACTACTTTTCGTTATCTGCTGTGTGAAGATATTTGCATGGCTAAGACTGCCTTTTCCTGTGCTCTGTTTTGTCACTGTTGCCTTTGCTGGTACAATGAATGATCACTAGAGGTGATGAGCGAGAAACAGGGATTATTTTGATACAGTGTTAACCGGCTAAAATAAGGGCTGCAACtattgatgatttttttaaaaaaattattttgctttatattgTCTCGAATATTTGAGTATTCTATAAAGAAAAAGAGCTTGAGATTTAATTCTTGAAATTCTTTGAAATCCAGCAGTAGAATATAAATCTAATGAAAGACTCTTATTCGGGACTGCACGCCAAAATTGCAGAAATTACCCACACCAAATGATAAACAACGCAGACCAAAATGCTTgcataataatatgataatatgatgCAGAGGTAAGAAAAATCATAATAGATGATATCAaatgataaattcacagtgataaattcaaatatttacaatatatttttgtgaatccatttatttctgtaaagctgctttgtgacaatgtccatagttaaaagcgctatacaaataaaattgaattgaattgaattgaaatgatgaaaaaaaatatttcattgcctTGTATGTGTTACGCCACACTTATGTGGTGATTATCTTGCATGTTAATGGGAGATTAACATTACTAGTAGTTGAACTATTATAGTTGTAATAGTTGAACTATTTTACCGTTTGATTTAATTATCAAATTGCTCAAATTTTTCAAGTATCAGTTGCAGCCCTAGTTAAAATATAAGTGCTATAAATTCTCAGACTGTGATAATTGCTTAAACTTTAATCACAGTTAGTAATGTTGCCACAATCttgtatttcttaaaaaaaaaaaaaaagaacgggaaaaaaagacaattttatCTCCCATGTTTTCCAACTTTCATGGAAATTTTTTAGCAGAATTATTGGATTTCCATTTCTGAGAAAGACATTAAATTAGTGAGCAAAATAATGAGCCTTGAAAGACATCTCTGTTTCTTATCCTGCTGAATAGGACAGGTTTTATCTAAGGAGCACAAACGCTACCTAGGCAATGCAAATTTTTATGTGTGTTGATTATTGAAACATATTGTAGAACTGATAATCAGCACACTCTTAATCCACACTTGGGCCACATTTGCTTTCCAGGAAACCAGTTGCCCAGTGGAACACTTTAacagtattttacattttacttgttgccatattatatgattattgcAGGTTTGACTAAGATGGAAAAGTTGACATTGTTTCAGTATTGACCAGCGGcacatttttacagtattttaaagcTTCTTGTTGCCAAgtcattttattgcttttgCTTGAATACAAAGTGAATAGGAATGAGACAAGCTTAAGCAGGCCTTAATGTGAAATCCTTAAGCTGTGTTGCTCCATCTGCTGAGCTTGAATTAACTTTGTCCGGTAAAACATTAGACTGTTTATTATCATATAGGAGTCCAGAGAGGCGatgcattacatttttattgtccCCTATGAAAACATTCATGCTTAAAGCTTATAGCTAGTTTATCCCGCAGTTAGACATAGAAACTGTCAAAATGTAGAACAAAACcaaattaatgaaatgtattttgttacattttgatATTCTGTTTTTCACCTATCTATATTAGTATTGCAAACATGCTTTAGAGCTACTACTAAAGCACATTTTGGGTCTTGTTTACCATTctggtataaataaataaggatgAGAAATGACCCAAGTACACATCTTAAATGTGTGCTTGGGTCATTCCTcatccttatttatttatactttttgaCTAACGTTCCTGTAAATTCCTGAtgcaaacaaaccaaatgtgGCATTAACTAGACTAATTATTTTTCACTTCCAGATCAGTCGTTtaaatgggacagaataataacaataacgcAGGGCCTCTCTGGACCTGTGTAAAACACTACTGACCCCTCtacctttacacattttgtccTGTAGCTTTCCAGTCATTTTTGTCACTACAGTACTCGTTTCAGAGAGAGGCATGTGGaccatatgtatttttttcttttaatctgtttagtATAATTTATACAGAAAGTGTTTTATAGatgtaaatgaatatattaCAAACTGTatattgcataaataaatgacaaatgcTGAATAATTGTTGAGCCCAA
>XM_034308760.1
TAGTGCACACTACAGCACTCAGTAGTCAGCACTCCACTACAGCACTCAGTACTCAGCACCGACTACAACCCTGAGGCTCCGACTAGGATTTTCTCCCGATAGCTGAAGGATTATTTTGTGTCTTTTCCTCATCATTTTGACTTTATTCTACCTCTGTTTCGACTTTTGCCCCATTTTCTCTGAGGATGTCGGTGGCGGGTTTGAAGAAGCAGTTTCATAAAGCCAGTCAGttacTGAGTGAGAAGATAAGTGGTGCTGAAGGGACAAAGCTCGATGAGGATTTCATGGAGATGGAGCGGAAAATAGATGTCACCAACAAGTCTGTGTTTGAGCTCCTAACCAAAACCACAGAATACCTCCAGCCAAACCCAGCATCACGAGCCAAACTGGGGATGCTGAACACCATGTCAAAGATCAGAGGACAGGTAAAGACCACTGGTTACCCACAGACAGAGGGGCTTCTGGGAGATTGCATGCTCCGGTACGGCCGTGAACTTGGAGACGACTCTACGTTtgGTTGTGCTCTGTTGGATGTGGGCGAGGCTATGAAACAAATGGCCGATGTTAAAGACTCGCTCGATATCAACGTGAAGCAGAACTTCATCGATCCGCTGCAGACACTGCAGGACAAAGACCTGAAGGAGATTGGGCATCATCTAAAGAAGCTGGAGGGACGGCGGTTAGATTACGACTATAAGAAGAAGCGTCAAGGCAAGATTGCTGATGATGAAATCAAGCAGGCTGTGGAGAAGTTTGTGGAGTCCAAGGAACTTGCCGAGAGGAGCATGTTCAACTTTTTAGAAAATGACGTGGAGCAGGTGAGTCAGCTAGCAGCTCTGATCGAGGCAGCACTGGAGTATCACCGTCAATCCAGCGACATCCTGGAGGAACTCAATGGCAAATTACAGAGCAGGATAAACACAGCAAGCTGTAAACCTAAGAAAGAGTTCAAGCCAAAGTCCATCATGTCCAGCCTGGAGGCCATCAACAGCAATCAGCATAATGGTGTCTCCTACACTTCCTCTCTAAAATCCACAGAGACGGAGCTGCACATGGACCAGCCGTGCTGCCGCTCGCTGTACGACTTCGAACCTGAAAACGAAGGGGAGCTCGGCTTTAAGGAAGGAGACATCATCATCCTTACCAATCAGATCGACGAGAACTGGTACGAAGGGATGATCAACGGCGAGTCAGGCTTCTTTCCCATCAACTACGTCGAGGTCCTAGTTCCCCTACCGCAATGA

Function

symbol description
sh3gl3a Predicted to enable lipid binding activity. Predicted to act upstream of or within endocytosis. Predicted to be located in early endosome membrane. Orthologous to human SH3GL3 (SH3 domain containing GRB2 like 3, endophilin A3).

NR:

description
PREDICTED: endophilin-A3-like isoform X2

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K11247 SH3GL; endophilin-A

RNA

RNA id representative length rna type GC content exon number start site end site
TU212321 False 1013 lncRNA 0.36 2 10486865 10487943
XM_026930581.2 True 6106 mRNA 0.37 11 10486735 10523579
XM_034308760.1 False 1244 mRNA 0.49 9 10491498 10523579

Neighbor

gene id symbol gene type direction distance location
adamtsl3 adamtsl3,LOC107591308,LOC107736989,LOC107685222,LOC107662271 coding downstream 33964 10258307 ~ 10452771 (-)
efl1 efl1,eftud1 coding downstream 235395 10114083 ~ 10251340 (-)
mex3b mex3b,mex3d,LOC100534722,LOC107596262,LOC101483145,LOC102192827 coding downstream 413425 10068517 ~ 10073310 (-)
LOC113536465 tmc3,LOC107553743,LOC107736984,LOC102796631 coding downstream 621950 9837999 ~ 9864785 (-)
stard5 stard5,star5,LOC107691451,LOC107709494 coding downstream 650775 9827948 ~ 9835960 (-)
LOC113536710 NA coding upstream 3454 10527033 ~ 10530371 (-)
rnf13 rnf13 coding upstream 21188 10544767 ~ 10555198 (-)
LOC113536758 LOC108270621,LOC108410683,LOC101070468,LOC103028064 coding upstream 57114 10580693 ~ 10592964 (-)
LOC113536600 NA coding upstream 71093 10594672 ~ 10597238 (-)
nmur1a LOC108270657 coding upstream 99710 10623289 ~ 10635357 (-)
G179372 NA non-coding downstream 374493 10112028 ~ 10112242 (-)
G179021 mesdc1,LOC107709503,LOC107591291,LOC107691577,LOC107662264,LOC107553753 non-coding downstream 712326 9770818 ~ 9774409 (-)
G179004 NA non-coding downstream 732356 9739531 ~ 9754379 (-)
G178961 NA non-coding downstream 859552 9625284 ~ 9627183 (-)
G178914 arnt2,LOC107395664 non-coding downstream 1042808 9440919 ~ 9443927 (-)
G179478 NA non-coding upstream 37824 10561403 ~ 10563452 (-)
G179485 NA non-coding upstream 50957 10574536 ~ 10576032 (-)
G179487 NA non-coding upstream 54841 10578420 ~ 10579460 (-)
G179727 NA non-coding upstream 670858 11194437 ~ 11195673 (-)
G179827 ttc14 non-coding upstream 1035340 11558919 ~ 11562343 (-)
G179035 NA other downstream 671510 9813892 ~ 9815225 (-)
G178942 NA other downstream 963405 9522416 ~ 9523330 (-)
LOC113536412 NA other downstream 1079517 9387491 ~ 9407218 (-)
mthfs mthfs,LOC102796869 other downstream 1150549 9320966 ~ 9336186 (-)
asb7 asb7,LOC107755647,LOC107662256,LOC107742335 other downstream 1491615 8983182 ~ 8995120 (-)
LOC113536673 NA other upstream 81932 10605511 ~ 10695119 (-)
nppc anfc4 other upstream 720268 11243847 ~ 11246310 (-)
G179803 ncl other upstream 885513 11409092 ~ 11420046 (-)
LOC117598430 NA other upstream 968128 11491707 ~ 11503962 (-)
LOC113536577 NA other upstream 987267 11510846 ~ 11518394 (-)

Expression


Co-expression Network