G179466


Basic Information

Item Value
gene id G179466
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 10511621 ~ 10512024 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU212324
ttttgttttatttgtagttcATGTCTGCGCTGAGACAGCAGAAACGCTATCTTAGCAGTCATGTTGTTATTGTTAGGTGCATACAATTCAAGGAAAAGACATTGTATTTGCTCCTTTTACTCCAGCTGTATTGTCTCAGTTCTTTGGAGAGTAAAAGAAGTTAAGTTGCATGctttgtttaaacaaacaaaaaaaacattgtctcAGCCATCTTTATTGTTCGTACTCCTCAATTCAGGAAATGCCACATTGGAGTAATATACAGAGTGTTATTGTACAGCTTCATGTTTATGGAACCGTATTTGAGATTCAGCATGCTCAGTATGTCTTCACTAACCCTGTGTTGCTTTCAGGAGAGGGATGCCCAGATAGACTGTTTTCTGGGCAGCATTTTTGTGCCCCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU212324 True 404 lncRNA 0.39 1 10511621 10512024

Neighbor

gene id symbol gene type direction distance location
adamtsl3 adamtsl3,LOC107591308,LOC107736989,LOC107685222,LOC107662271 coding downstream 58850 10258307 ~ 10452771 (-)
efl1 efl1,eftud1 coding downstream 260281 10114083 ~ 10251340 (-)
mex3b mex3b,mex3d,LOC100534722,LOC107596262,LOC101483145,LOC102192827 coding downstream 438311 10068517 ~ 10073310 (-)
LOC113536465 tmc3,LOC107553743,LOC107736984,LOC102796631 coding downstream 646836 9837999 ~ 9864785 (-)
stard5 stard5,star5,LOC107691451,LOC107709494 coding downstream 675661 9827948 ~ 9835960 (-)
LOC113536710 NA coding upstream 15009 10527033 ~ 10530371 (-)
rnf13 rnf13 coding upstream 32743 10544767 ~ 10555198 (-)
LOC113536758 LOC108270621,LOC108410683,LOC101070468,LOC103028064 coding upstream 68669 10580693 ~ 10592964 (-)
LOC113536600 NA coding upstream 82648 10594672 ~ 10597238 (-)
nmur1a LOC108270657 coding upstream 111265 10623289 ~ 10635357 (-)
G179372 NA non-coding downstream 399379 10112028 ~ 10112242 (-)
G179021 mesdc1,LOC107709503,LOC107591291,LOC107691577,LOC107662264,LOC107553753 non-coding downstream 737212 9770818 ~ 9774409 (-)
G179004 NA non-coding downstream 757242 9739531 ~ 9754379 (-)
G178961 NA non-coding downstream 884438 9625284 ~ 9627183 (-)
G178914 arnt2,LOC107395664 non-coding downstream 1067694 9440919 ~ 9443927 (-)
G179469 NA non-coding upstream 2672 10514696 ~ 10515201 (-)
G179478 NA non-coding upstream 49379 10561403 ~ 10563452 (-)
G179485 NA non-coding upstream 62512 10574536 ~ 10576032 (-)
G179487 NA non-coding upstream 66396 10578420 ~ 10579460 (-)
G179727 NA non-coding upstream 682413 11194437 ~ 11195673 (-)
G179035 NA other downstream 696396 9813892 ~ 9815225 (-)
G178942 NA other downstream 988291 9522416 ~ 9523330 (-)
LOC113536412 NA other downstream 1104403 9387491 ~ 9407218 (-)
mthfs mthfs,LOC102796869 other downstream 1175435 9320966 ~ 9336186 (-)
asb7 asb7,LOC107755647,LOC107662256,LOC107742335 other downstream 1516501 8983182 ~ 8995120 (-)
LOC113536673 NA other upstream 93487 10605511 ~ 10695119 (-)
nppc anfc4 other upstream 731823 11243847 ~ 11246310 (-)
G179803 ncl other upstream 897068 11409092 ~ 11420046 (-)
LOC117598430 NA other upstream 979683 11491707 ~ 11503962 (-)
LOC113536577 NA other upstream 998822 11510846 ~ 11518394 (-)

Expression


Co-expression Network