G179478


Basic Information

Item Value
gene id G179478
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 10561403 ~ 10563452 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU212342
agaGACCACAATGTTGAATTATCCTCTTCCTAAATgaagatataaaaaatacaatttcacTAAAAGTAGGAAAGTTTGAGCAGTGTGTAAAATTAAGcacaataatgaaaatatttcacagaGTGGAAAAATTATACTAAAATTGTattataaaaatctttttaaaaactcaTTCTTGGTATAAAACAGGGTTTAACTGTGTAAACCTTCCACATCCTGTTCAtgtctgctctctctcacacacacacacagctccaccACCTGGGTTTCCATGTTAttcagaaatgtattaaatgtgcTGTAGGAATGAAAACAGCAGATGACAAGATGAGCCGATTAAgcaatgttcatgttttttgaGAAAATATATCTGCAAGTGATGATGTTTTAAACAACTGCCAAACATGCTGTTGTTTCTGAGTGGTACTAACACTGCACCCCAGCTAAACACAGCATGTAACACACGGTATATGAACAGCATCTGCACATCACACAATGcaacaatttattttacaaatcaaAGCCAGAATAGTGCAGAATATAGAGCGTTAAGTATCAGACCTGAAAAATGTTCCTGAGCTCATTTACAGTccacatgaacaaaaaaatgctaACCAACAACAAGCACCAACAGCTGCTCAGCCTGTTAGTTAAATGATCATGTTGTGGtcattttattgattaaattaaaaatacttaatattaaCATTCCTAAATGAAGACTAAAATGGCTTGTAAGGTTTTTCTATACTGCCTCAAagcatcatttttgttttaacccTTAAACATTCCACATTTTGGTTTGCAGTACAAGCTGATCCACACTGCATGAAACAAGCCTCACAAAACAGATTCGCTTTCATTTTAACACAAGTTTCAATTTCACACctcaattaaacacacacaaaacacatcctGCTTCGACTGTTCTCCACTCACACCCATAAATGAAGTGGAAACTAACAATGCAATCAAACTTCCACTTTCTACAGCATGTTAACTGTATTAAAACTCTACACCACAGTCATAACTGCACtgcagtgtgtaaagtgtaaagtgtagaaAGTAAAGATAGGGTTTACAATGTAGAGTGCAAAGTGTAGCGCGTACAATTAAAGTGTAGATTGTACAGTCTATGGTGTAAAGTTTACAGTAATGACACTGATGGATAAATAAATCTCTGCATGCTGTTCTGTTCTCTGTCTCACATCATGGTTTTATTGGGCTGGATTTTATTTACTGCTGACTTCAGCCGACCTGCAGTTTTGGTTCACACACTTGTTCATTAAAGCGTTAGAAGTTTTGATAAGAAAGAAGTGTGCTGTCAATTGTCATAGCATGTACAAATACGTATGGTGCAGAGTGTACACACAGCTCTTATGCATCACTGTGGTGATGGAGCTGGTGTGAGTTTGGGGTCAGTGTAAAATTCCGCACTGTCAGCCTGATGAAACTTCGTGCCTAAGGGGAATTTGACCAACAGGTCATCCGACCACAGAAGAAAGGTTGCATGACTTTTCATATCAGTGTGTCGTTGTGTGCAGAAACTCACTTGTCATGACAGTGATGGTAGTCTCCAGCAAAATGCTCTACTCTCTCAAGTGTATCATCTTTCACACTGCTGTAGCGACATGgcacatttgtgtttttagctTCTGGAGCACAGAACTGCCAGAAATGAACTGAACACAagcaaagacagagagaggggacTGGAAAAGGTAACGTGCTCCTCATTAAACTGTCTGGAGATCGGTCTGAGGTTTATTTAAGAACAGgtgtgtgatgtgcagtgtgcaagtttgtgtgtgtgtgtgtgtgtgtgtgtaacagaactgaaaaaacagtaaaagtagGAATCAATTTGCCAGTCAAagccagaagaaaaaaaaaaatactgtgctGCGTTGAACATACACTCATCtgttacacacacttaaagtatGCATCACTCTGTTTTAGAACTGTCCATGTTGACCCCACGTAACTCTGTCAGTGTGTGCGTGCTGCTGGAGTTCTGCTGATTTATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU212342 True 2030 lncRNA 0.38 2 10561403 10563452

Neighbor

gene id symbol gene type direction distance location
rnf13 rnf13 coding downstream 6205 10544767 ~ 10555198 (-)
LOC113536710 NA coding downstream 31032 10527033 ~ 10530371 (-)
adamtsl3 adamtsl3,LOC107591308,LOC107736989,LOC107685222,LOC107662271 coding downstream 108632 10258307 ~ 10452771 (-)
efl1 efl1,eftud1 coding downstream 310063 10114083 ~ 10251340 (-)
mex3b mex3b,mex3d,LOC100534722,LOC107596262,LOC101483145,LOC102192827 coding downstream 488093 10068517 ~ 10073310 (-)
LOC113536758 LOC108270621,LOC108410683,LOC101070468,LOC103028064 coding upstream 17241 10580693 ~ 10592964 (-)
LOC113536600 NA coding upstream 31220 10594672 ~ 10597238 (-)
nmur1a LOC108270657 coding upstream 59837 10623289 ~ 10635357 (-)
hykk.2 hykk coding upstream 75569 10639021 ~ 10644194 (-)
mfsd8l1 LOC108271204 coding upstream 532675 11096127 ~ 11108565 (-)
G179469 NA non-coding downstream 46202 10514696 ~ 10515201 (-)
G179466 NA non-coding downstream 49379 10511621 ~ 10512024 (-)
G179372 NA non-coding downstream 449161 10112028 ~ 10112242 (-)
G179021 mesdc1,LOC107709503,LOC107591291,LOC107691577,LOC107662264,LOC107553753 non-coding downstream 786994 9770818 ~ 9774409 (-)
G179004 NA non-coding downstream 807024 9739531 ~ 9754379 (-)
G179485 NA non-coding upstream 11084 10574536 ~ 10576032 (-)
G179487 NA non-coding upstream 14968 10578420 ~ 10579460 (-)
G179727 NA non-coding upstream 630985 11194437 ~ 11195673 (-)
G179827 ttc14 non-coding upstream 995467 11558919 ~ 11562343 (-)
G179972 NA non-coding upstream 1164825 11728277 ~ 11777745 (-)
sh3gl3a sh3gl3a,LOC108271217,LOC108439633,LOC107709492,LOC107685195,LOC107591296 other downstream 37824 10486735 ~ 10523579 (-)
G179035 NA other downstream 746178 9813892 ~ 9815225 (-)
G178942 NA other downstream 1038073 9522416 ~ 9523330 (-)
LOC113536412 NA other downstream 1154185 9387491 ~ 9407218 (-)
mthfs mthfs,LOC102796869 other downstream 1225217 9320966 ~ 9336186 (-)
LOC113536673 NA other upstream 42059 10605511 ~ 10695119 (-)
nppc anfc4 other upstream 680395 11243847 ~ 11246310 (-)
G179803 ncl other upstream 845640 11409092 ~ 11420046 (-)
LOC117598430 NA other upstream 928255 11491707 ~ 11503962 (-)
LOC113536577 NA other upstream 947394 11510846 ~ 11518394 (-)

Expression


Co-expression Network