LOC113536673


Basic Information

Item Value
gene id LOC113536673
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 10605511 ~ 10695119 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU212392
cacacgcacacacacacacacacactcacacacattgctacTGTTTTACAAGGTGTCCGAAAAGTCAGCAACCAAATAATATGTCATACAAACATGTTGATCcataaaaacatgatacagtgGCTGAGAAAATGAGTAGAGCGTAAGGGtgaacatgtacagtatatgttataaataataaatacaaaattaagtatatgtagttttactctcattggttcatGACTTTTCCGACATCCTGTAttatacataaaaaacacagaatCTTATTGCAATGGTGATATATCAGAGTGATGATATACAACAATAATCTAAAATCTTTATATCGTTGACATAAAATGATGATACATGAGGGATATTAATATTCAGATATGTATATTGTTAGCATTGTGATACACTAGTATAATGACATCACAGTAAATATAGAGTTATGTATCAGGGACAGAGTGTGATGATCTTTCAGGGTCGAGGtaaattaaacatatataataatgaaatcTTTCTCAAAATAAACCTTTATCTTTATCTTCATATCATTATGTTGAGAAACCATATCATTATTATGAC
>XM_026930772.2
TTCCGTTTCTCGTCTCAGCACCATGTTCCAGCTGCTGAAGAAGTGTCTGATTCTCCTATTTTTCTATTTGTGCTGCGTTCCagtgggCTGTGATGATGTTCTCCATGTGAATGGAACAGAAGGCCAGAATCTCACAGTTACATTCATGCTGAAGAGCACAATTGAAACCACCAAGGAAGTGTACATGTACCGAGACAACACAAAGATTCACAAGCTCACCATAACCAACATGTCCTGCTTTCCATCTGTAAACCACACACTGCCCACCATCTGCATCTCCCATGTGTCCCAAAGAAACATCAGTCTGATGTTCACACATCTCATACACAGTGGAGTGTATCACCTTGCTGTGTTATCTCCAAACTTCACACTGGAAGAAAGTAACAAAGTGAGCTTGACTGTACACCCCGCTGAGTACACAACAACATACACCACAGttacaGCTGCCTTATTCAATAACACATCCTTCCAACTGGACCAATCAGGAAAAAAGTCCAGCATTTTGATGTTTGTTCCAGTGCTGGTTGTAGCCGTGATGTTGGTGATTGTTCTGCTCGGCTCATTTTACTGGAGCTACAGGAGGAAAACAGACAAAACTCCTGCTGTGAACTCCACATCTGCACCACAGattCCTGATGTTAGCTGTGTTGAGTACTGTGTTCTGGACTTTCCAAACCGAGCTGGAGAGAAAGTGAGGAGCACAGAGGAGCGAGTGGAGTATTCCCCCATCGTGTTTCCCCCAAGAAAAACGTCAGCACAAGACAATGAGATAAAATCAACGACACaacaaaataagataaaaatgacAACACTGCAGCatgaggagagagaaacagacaaagtGTCTGAGAAACCAAAAACATCAAAACCTAAACATcagaaatgtcaaaaaaaaaatcacacctaATCACATCCTGTCACACTCAAAAGGCACAAGTGTGATtcacacaaacatattttaGGCCACTGAATACAttgcatgcattttttaaaaattattattagtttgcAGATAACACAAATTTTATGCTAAGCATGTATCAGGACGCATATTGACGTTCACATCAAATTTTCTCTTCAGgtgctctgcatttaattattaattattaattattttaattactacACTTTAAGTATTACAGTTTCCTTACATATCAGCCTGCAAGAGGAAACAATAACTCCCGTATTCCTGTAGTGGTGATAATGTGCCCTCATCCACTTCCCCTCATCCGCTTCTATTCAAAATCCACAAAACCATGATACAGCAGCTGAGAAAATGAGTAGAGCGTAAGAGggaacatgtacagtatatgttgtaaataataaatacaaaattaagtatatgtagttttactctcattggttcccTGACTTTTGAGTGGTTAAGGAAAGTGGACAAGGGCACGTTATAAATAGTATTGAAACACAAggagatgtttggtgtgaaaataaaaagataaagtaTGTGTTCTACTGGGAGAAACATTGCTGTTTCAATACAGCACACAACAATACAGCAAAAGAGacaactgtgtatgtgtgtgtgtgtgtgtgtactgcagtGCAGTGTACCAATGTTACTTAGGTGACAACCACATACACCATGGTGTGAAATCcccaacacacacgcacacacacacacacacacacacattgctacTGTTTTACAAGGTGTCCGAAAAGTCAGCAACCAAATAATATGTCATACAAACATGTTGATCcataaaaacatgatacagtgGCTGAGAAAATGAGTAGAGCGTAAGGGtgaacatgtacagtatatgttataaataataaatacaaaattaagtatatgtagttttactctcattggttcatGACTTTTCCGACATCCTGTAttatacataaaaaacacagaatCTTATTGCAATGGTGATATATCAGAGTGATGATATACAACAATAATCTAAAATCTTTATATCGTTGACATAAAATGATGATACATGAGGGATATTAATATTCAGATATGTATATTGTTAGCATTGTGATACACTAGTATAATGACATCACAGTAAATATAGAGTTATGTATCAGGGACAGAGTGTGATGATCTTTCAGGGTCGAGGtaaattaaacatatataataatgaaatcTTTCTCAAAATAAACCTTTATCTTTATCTTCATATCATTATGTTGAGAAACCATATCATTAT
>XM_034308842.1
TTCCGTTTCTCGTCTCAGCACCATGTTCCAGCTGCTGAAGAAGTGTCTGATTCTCCTATTTTTCTATTTGTGCTGCGTTCCagtgggCTGTGATGATGTTCTCCATGTGAATGGAACAGAAGGCCAGAATCTCACAGTTACATTCATGCTGAAGAGCACAATTGAAACCACCAAGGAAGTGTACATGTACCGAGACAACACAAAGATTCACAAGCTCACCATAACCAACATGTCCTGCTTTCCATCTGTAAACCACACACTGCCCACCATCTGCATCTCCCATGTGTCCCAAAGAAACATCAGTCTGATGTTCACACATCTCATACACAGTGGAGTGTATCACCTTGCTGTGTTATCTCCAAACTTCACACTGGAAGAAAGTAACAAAGTGAGCTTGACTGTACACCCCGCTGAGTACACAACAACATACACCACAGCTGCCTTATTCAATAACACATCCTTCCAACTGGACCAATCAGGAAAAAAGTCCAGCATTTTGATGTTTGTTCCAGTGCTGGTTGTAGCCGTGATGTTGGTGATTGTTCTGCTCGGCTCATTTTACTGGAGCTACAGGAGGAAAACAGACAAAACTCCTGCTGTGAACTCCACATCTGCACCACAGattCCTGATGTTAGCTGTGTTGAGTACTGTGTTCTGGACTTTCCAAACCGAGCTGGAGAGAAAGTGAGGAGCACAGAGGAGCGAGTGGAGTATTCCCCCATCGTGTTTCCCCCAAGAAAAACGTCAGCACAAGACAATGAGATAAAATCAACGACACaacaaaataagataaaaatgacAACACTGCAGCatgaggagagagaaacagacaaagtGTCTGAGAAACCAAAAACATCAAAACCTAAACATcagaaatgtcaaaaaaaaaatcacacctaATCACATCCTGTCACACTCAAAAGGCACAAGTGTGATtcacacaaacatattttaGGCCACTGAATACAttgcatgcattttttaaaaattattattagtttgcAGATAACACAAATTTTATGCTAAGCATGTATCAGGACGCATATTGACGTTCACATCAAATTTTCTCTTCAGgtgctctgcatttaattattaattattaattattttaattactacACTTTAAGTATTACAGTTTCCTTACATATCAGCCTGCAAGAGGAAACAATAACTCCCGTATTCCTGTAGTGGTGATAATGTGCCCTCATCCACTTCCCCTCATCCGCTTCTATTCAAAATCCACAAAACCATGATACAGCAGCTGAGAAAATGAGTAGAGCGTAAGAGggaacatgtacagtatatgttgtaaataataaatacaaaattaagtatatgtagttttactctcattggttcccTGACTTTTGAGTGGTTAAGGAAAGTGGACAAGGGCACGTTATAAATAGTATTGAAACACAAggagatgtttggtgtgaaaataaaaagataaagtaTGTGTTCTACTGGGAGAAACATTGCTGTTTCAATACAGCACACAACAATACAGCAAAAGAGacaactgtgtatgtgtgtgtgtgtgtgtgtactgcagtGCAGTGTACCAATGTTACTTAGGTGACAACCACATACACCATGGTGTGAAATCcccaacacacacgcacacacacacacacacacacacattgctacTGTTTTACAAGGTGTCCGAAAAGTCAGCAACCAAATAATATGTCATACAAACATGTTGATCcataaaaacatgatacagtgGCTGAGAAAATGAGTAGAGCGTAAGGGtgaacatgtacagtatatgttataaataataaatacaaaattaagtatatgtagttttactctcattggttcatGACTTTTCCGACATCCTGTAttatacataaaaaacacagaatCTTATTGCAATGGTGATATATCAGAGTGATGATATACAACAATAATCTAAAATCTTTATATCGTTGACATAAAATGATGATACATGAGGGATATTAATATTCAGATATGTATATTGTTAGCATTGTGATACACTAGTATAATGACATCACAGTAAATATAGAGTTATGTATCAGGGACAGAGTGTGATGATCTTTCAGGGTCGAGGtaaattaaacatatataataatgaaatcTTTCTCAAAATAAACCTTTATCTTTATCTTCATATCATTATGTTGAGAAACCATATCATTAT

Function

GO: NA

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU212392 False 567 lncRNA 0.31 2 10605511 10695119
XM_026930772.2 True 2180 mRNA 0.38 5 10605517 10616272
XM_034308842.1 False 2174 mRNA 0.38 5 10605517 10616272

Neighbor

gene id symbol gene type direction distance location
LOC113536600 NA coding downstream 8273 10594672 ~ 10597238 (-)
LOC113536758 LOC108270621,LOC108410683,LOC101070468,LOC103028064 coding downstream 12547 10580693 ~ 10592964 (-)
rnf13 rnf13 coding downstream 50313 10544767 ~ 10555198 (-)
LOC113536710 NA coding downstream 75140 10527033 ~ 10530371 (-)
adamtsl3 adamtsl3,LOC107591308,LOC107736989,LOC107685222,LOC107662271 coding downstream 152740 10258307 ~ 10452771 (-)
mfsd8l1 LOC108271204 coding upstream 401008 11096127 ~ 11108565 (-)
polr2h polr2h coding upstream 415426 11110545 ~ 11113589 (-)
LOC113536755 acap2 coding upstream 500920 11196039 ~ 11237809 (-)
psmd1 psmd1 coding upstream 733486 11428605 ~ 11475968 (-)
LOC113536618 LOC108271381 coding upstream 783489 11478608 ~ 11481509 (-)
G179487 NA non-coding downstream 26051 10578420 ~ 10579460 (-)
G179485 NA non-coding downstream 29479 10574536 ~ 10576032 (-)
G179478 NA non-coding downstream 42059 10561403 ~ 10563452 (-)
G179469 NA non-coding downstream 90310 10514696 ~ 10515201 (-)
G179466 NA non-coding downstream 93487 10511621 ~ 10512024 (-)
G179727 NA non-coding upstream 499318 11194437 ~ 11195673 (-)
G179827 ttc14 non-coding upstream 863800 11558919 ~ 11562343 (-)
G179972 NA non-coding upstream 1033158 11728277 ~ 11777745 (-)
G180111 NA non-coding upstream 1301051 11996170 ~ 11996383 (-)
G180127 NA non-coding upstream 1358162 12053281 ~ 12054861 (-)
sh3gl3a sh3gl3a,LOC108271217,LOC108439633,LOC107709492,LOC107685195,LOC107591296 other downstream 81932 10486735 ~ 10523579 (-)
G179035 NA other downstream 790286 9813892 ~ 9815225 (-)
G178942 NA other downstream 1082181 9522416 ~ 9523330 (-)
LOC113536412 NA other downstream 1198293 9387491 ~ 9407218 (-)
mthfs mthfs,LOC102796869 other downstream 1269325 9320966 ~ 9336186 (-)
nppc anfc4 other upstream 548728 11243847 ~ 11246310 (-)
G179803 ncl other upstream 713973 11409092 ~ 11420046 (-)
LOC117598430 NA other upstream 796588 11491707 ~ 11503962 (-)
LOC113536577 NA other upstream 815727 11510846 ~ 11518394 (-)
LOC117598402 NA other upstream 832838 11527957 ~ 11532033 (-)

Expression


Co-expression Network