G179558


Basic Information

Item Value
gene id G179558
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 10805105 ~ 10805311 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU212443
CCAGCACCATGCaaaggttttgtgtttttatttatttgctgtttgattCTCAATATGTTAGTTAGTTGTACTTTAAACAACAGCCCACAACTTACTAACTTACGAACTTACTAACAAGACAATTTCACCAAGCCTCATTTTGTTATTCAGTCCATACATCAATCTGAAGCTTTTGGCAACATGACAGAACTACAATGTCATTTTCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU212443 True 207 lncRNA 0.35 1 10805105 10805311

Neighbor

gene id symbol gene type direction distance location
LOC113536756 LOC108271257 coding upstream 131053 10650258 ~ 10674052 (+)
tctex1d2 tctex1d2 coding upstream 181941 10617812 ~ 10623164 (+)
rubcn rubcn coding upstream 225712 10565259 ~ 10579393 (+)
LOC113536420 NA coding upstream 241612 10555285 ~ 10563493 (+)
cx36.7 LOC108270620 coding upstream 321494 10482171 ~ 10483611 (+)
LOC113536667 armc9 coding downstream 308333 11113644 ~ 11160226 (+)
b3gnt7 b3gnt7 coding downstream 370786 11176097 ~ 11181854 (+)
alpi.1 LOC108270517,LOC108410621,LOC105900923,LOC107698042,LOC107550664 coding downstream 555653 11360964 ~ 11379995 (+)
alpi.2 LOC108270538,LOC108410619 coding downstream 579495 11384806 ~ 11392946 (+)
ppp1r2 ppp1r2 coding downstream 589896 11395207 ~ 11402964 (+)
LOC113536738 NA non-coding upstream 20991 10783125 ~ 10784114 (+)
G179428 NA non-coding upstream 307393 10497488 ~ 10497712 (+)
G179427 NA non-coding upstream 307965 10496648 ~ 10497140 (+)
G179426 NA non-coding upstream 312636 10492033 ~ 10492469 (+)
G179425 NA non-coding upstream 313332 10486697 ~ 10491773 (+)
G179561 NA non-coding downstream 3725 10809036 ~ 10809271 (+)
G179572 NA non-coding downstream 58338 10863649 ~ 10863850 (+)
G179628 NA non-coding downstream 264278 11069589 ~ 11069817 (+)
G179647 NA non-coding downstream 346707 11152018 ~ 11152956 (+)
G179648 NA non-coding downstream 346838 11152149 ~ 11154763 (+)
LOC113536578 NA other upstream 2534355 8253421 ~ 8270750 (+)
trnar-ucg_8 NA other upstream 2557017 8248016 ~ 8248088 (+)
trnar-acg_6 NA other upstream 2560081 8244952 ~ 8245024 (+)
trnar-ucg_6 NA other upstream 2561457 8243355 ~ 8243648 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other upstream 3533785 7267831 ~ 7271320 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other downstream 5359 10810670 ~ 10850923 (+)
G179632 NA other downstream 290842 11096153 ~ 11098811 (+)
G179643 NA other downstream 355035 11160346 ~ 11161597 (+)
G179758 psmd1 other downstream 623302 11428613 ~ 11430897 (+)
G180121 NA other downstream 1249647 12054958 ~ 12055749 (+)

Expression


Co-expression Network