G179561


Basic Information

Item Value
gene id G179561
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 10809036 ~ 10809271 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU212446
CTATGTTGGATTTTtcattgtatttacatttacagtgtttagcaGATGTtcttatccagagtgatttACAGGAGTTCTGTATaatctctatcaaaaacatccTCATTCTAGTACACATAGTTCAGGGGCTTAGAGTACTATTGAGCTACATCCCTATTAGAGATGAGTTAGTGGCGTTTGTCTTGTCACTTGATTGTGGTTTAATTCAAACCACAGGTAGATCTGTTGGtagaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU212446 True 236 lncRNA 0.36 1 10809036 10809271

Neighbor

gene id symbol gene type direction distance location
LOC113536756 LOC108271257 coding upstream 134984 10650258 ~ 10674052 (+)
tctex1d2 tctex1d2 coding upstream 185872 10617812 ~ 10623164 (+)
rubcn rubcn coding upstream 229643 10565259 ~ 10579393 (+)
LOC113536420 NA coding upstream 245543 10555285 ~ 10563493 (+)
cx36.7 LOC108270620 coding upstream 325425 10482171 ~ 10483611 (+)
LOC113536667 armc9 coding downstream 304373 11113644 ~ 11160226 (+)
b3gnt7 b3gnt7 coding downstream 366826 11176097 ~ 11181854 (+)
alpi.1 LOC108270517,LOC108410621,LOC105900923,LOC107698042,LOC107550664 coding downstream 551693 11360964 ~ 11379995 (+)
alpi.2 LOC108270538,LOC108410619 coding downstream 575535 11384806 ~ 11392946 (+)
ppp1r2 ppp1r2 coding downstream 585936 11395207 ~ 11402964 (+)
G179558 NA non-coding upstream 3725 10805105 ~ 10805311 (+)
LOC113536738 NA non-coding upstream 24922 10783125 ~ 10784114 (+)
G179428 NA non-coding upstream 311324 10497488 ~ 10497712 (+)
G179427 NA non-coding upstream 311896 10496648 ~ 10497140 (+)
G179426 NA non-coding upstream 316567 10492033 ~ 10492469 (+)
G179572 NA non-coding downstream 54378 10863649 ~ 10863850 (+)
G179628 NA non-coding downstream 260318 11069589 ~ 11069817 (+)
G179647 NA non-coding downstream 342747 11152018 ~ 11152956 (+)
G179648 NA non-coding downstream 342878 11152149 ~ 11154763 (+)
G179685 NA non-coding downstream 353750 11163021 ~ 11163379 (+)
LOC113536578 NA other upstream 2538286 8253421 ~ 8270750 (+)
trnar-ucg_8 NA other upstream 2560948 8248016 ~ 8248088 (+)
trnar-acg_6 NA other upstream 2564012 8244952 ~ 8245024 (+)
trnar-ucg_6 NA other upstream 2565388 8243355 ~ 8243648 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other upstream 3537716 7267831 ~ 7271320 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other downstream 1399 10810670 ~ 10850923 (+)
G179632 NA other downstream 286882 11096153 ~ 11098811 (+)
G179643 NA other downstream 351075 11160346 ~ 11161597 (+)
G179758 psmd1 other downstream 619342 11428613 ~ 11430897 (+)
G180121 NA other downstream 1245687 12054958 ~ 12055749 (+)

Expression


Co-expression Network