Gene
RNA
| Item | Value |
|---|---|
| gene id | G179647 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047605.1 |
| NCBI id | CM018551.1 |
| chromosome length | 26640196 |
| location | 11152018 ~ 11152956 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU212552 | True | 255 | lncRNA | 0.49 | 2 | 11152018 | 11152956 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113536756 | LOC108271257 | coding | upstream | 477966 | 10650258 ~ 10674052 (+) |
| tctex1d2 | tctex1d2 | coding | upstream | 528854 | 10617812 ~ 10623164 (+) |
| rubcn | rubcn | coding | upstream | 572625 | 10565259 ~ 10579393 (+) |
| LOC113536420 | NA | coding | upstream | 588525 | 10555285 ~ 10563493 (+) |
| cx36.7 | LOC108270620 | coding | upstream | 668407 | 10482171 ~ 10483611 (+) |
| b3gnt7 | b3gnt7 | coding | downstream | 23141 | 11176097 ~ 11181854 (+) |
| alpi.1 | LOC108270517,LOC108410621,LOC105900923,LOC107698042,LOC107550664 | coding | downstream | 208008 | 11360964 ~ 11379995 (+) |
| alpi.2 | LOC108270538,LOC108410619 | coding | downstream | 231850 | 11384806 ~ 11392946 (+) |
| ppp1r2 | ppp1r2 | coding | downstream | 242251 | 11395207 ~ 11402964 (+) |
| ncl | ncl | coding | downstream | 256112 | 11409068 ~ 11419817 (+) |
| G179628 | NA | non-coding | upstream | 82201 | 11069589 ~ 11069817 (+) |
| G179572 | NA | non-coding | upstream | 288168 | 10863649 ~ 10863850 (+) |
| G179561 | NA | non-coding | upstream | 342747 | 10809036 ~ 10809271 (+) |
| G179558 | NA | non-coding | upstream | 346707 | 10805105 ~ 10805311 (+) |
| LOC113536738 | NA | non-coding | upstream | 367904 | 10783125 ~ 10784114 (+) |
| G179685 | NA | non-coding | downstream | 10065 | 11163021 ~ 11163379 (+) |
| G179696 | NA | non-coding | downstream | 41880 | 11194836 ~ 11195687 (+) |
| G179754 | NA | non-coding | downstream | 247968 | 11400924 ~ 11401434 (+) |
| G179753 | NA | non-coding | downstream | 251403 | 11404359 ~ 11407414 (+) |
| G179773 | NA | non-coding | downstream | 318390 | 11471346 ~ 11473207 (+) |
| G179632 | NA | other | upstream | 53207 | 11096153 ~ 11098811 (+) |
| LOC113536516 | ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 | other | upstream | 301095 | 10810670 ~ 10850923 (+) |
| LOC113536578 | NA | other | upstream | 2881268 | 8253421 ~ 8270750 (+) |
| trnar-ucg_8 | NA | other | upstream | 2903930 | 8248016 ~ 8248088 (+) |
| trnar-acg_6 | NA | other | upstream | 2906994 | 8244952 ~ 8245024 (+) |
| G179643 | NA | other | downstream | 7390 | 11160346 ~ 11161597 (+) |
| G179758 | psmd1 | other | downstream | 275657 | 11428613 ~ 11430897 (+) |
| G180121 | NA | other | downstream | 902002 | 12054958 ~ 12055749 (+) |
| timm13 | timm13,LOC107731338,LOC106573564,LOC107593051 | other | downstream | 1175096 | 12328052 ~ 12333681 (+) |
| cdc14ab | cdc14a | other | downstream | 1359932 | 12512888 ~ 12561781 (+) |
