Gene
RNA
| Item | Value |
|---|---|
| gene id | G179696 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047605.1 |
| NCBI id | CM018551.1 |
| chromosome length | 26640196 |
| location | 11194836 ~ 11195687 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU212604 | True | 852 | lncRNA | 0.35 | 1 | 11194836 | 11195687 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| b3gnt7 | b3gnt7 | coding | upstream | 12982 | 11176097 ~ 11181854 (+) |
| LOC113536667 | armc9 | coding | upstream | 34610 | 11113644 ~ 11160226 (+) |
| LOC113536756 | LOC108271257 | coding | upstream | 520784 | 10650258 ~ 10674052 (+) |
| tctex1d2 | tctex1d2 | coding | upstream | 571672 | 10617812 ~ 10623164 (+) |
| rubcn | rubcn | coding | upstream | 615443 | 10565259 ~ 10579393 (+) |
| alpi.1 | LOC108270517,LOC108410621,LOC105900923,LOC107698042,LOC107550664 | coding | downstream | 165277 | 11360964 ~ 11379995 (+) |
| alpi.2 | LOC108270538,LOC108410619 | coding | downstream | 189119 | 11384806 ~ 11392946 (+) |
| ppp1r2 | ppp1r2 | coding | downstream | 199520 | 11395207 ~ 11402964 (+) |
| ncl | ncl | coding | downstream | 213381 | 11409068 ~ 11419817 (+) |
| LOC113536790 | NA | coding | downstream | 216373 | 11412060 ~ 11412127 (+) |
| G179685 | NA | non-coding | upstream | 31457 | 11163021 ~ 11163379 (+) |
| G179648 | NA | non-coding | upstream | 40073 | 11152149 ~ 11154763 (+) |
| G179647 | NA | non-coding | upstream | 41880 | 11152018 ~ 11152956 (+) |
| G179628 | NA | non-coding | upstream | 125019 | 11069589 ~ 11069817 (+) |
| G179572 | NA | non-coding | upstream | 330986 | 10863649 ~ 10863850 (+) |
| G179754 | NA | non-coding | downstream | 205237 | 11400924 ~ 11401434 (+) |
| G179753 | NA | non-coding | downstream | 208672 | 11404359 ~ 11407414 (+) |
| G179773 | NA | non-coding | downstream | 275659 | 11471346 ~ 11473207 (+) |
| G179775 | NA | non-coding | downstream | 277881 | 11473568 ~ 11475147 (+) |
| G179779 | NA | non-coding | downstream | 282661 | 11478348 ~ 11530003 (+) |
| G179643 | NA | other | upstream | 33239 | 11160346 ~ 11161597 (+) |
| G179632 | NA | other | upstream | 96025 | 11096153 ~ 11098811 (+) |
| LOC113536516 | ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 | other | upstream | 343913 | 10810670 ~ 10850923 (+) |
| LOC113536578 | NA | other | upstream | 2924086 | 8253421 ~ 8270750 (+) |
| trnar-ucg_8 | NA | other | upstream | 2946748 | 8248016 ~ 8248088 (+) |
| G179758 | psmd1 | other | downstream | 232926 | 11428613 ~ 11430897 (+) |
| G180121 | NA | other | downstream | 859271 | 12054958 ~ 12055749 (+) |
| timm13 | timm13,LOC107731338,LOC106573564,LOC107593051 | other | downstream | 1132365 | 12328052 ~ 12333681 (+) |
| cdc14ab | cdc14a | other | downstream | 1317201 | 12512888 ~ 12561781 (+) |
| LOC117598398 | NA | other | downstream | 1377470 | 12573157 ~ 12602064 (+) |
