G179727


Basic Information

Item Value
gene id G179727
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 11194437 ~ 11195673 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU212640
TTCTGCGTAGTTAAACTTGagtcaaatttaatttaaaaaattaaatgaactttAGCTCGATGATGGAACTCGGTTTTTATCAGATATTATTCCACAGCGAGGCACAGGAGTCTGAGTATTaaacatattacatttatactaACGGAATTTATTAGCAGTGTTCTGAATATATTTCAATTAATTGAGGGCTTCAGTGCAAGACTATAGAAGTAAAGTTCACACAATAAACAGGTGTAAAATATggattttatgcaaatgagatgcaaatctctctctgctttcctcagtttattttttgtctttgctCTCTTCCATGTTTTACTTTTCTTAAAATTGTTAGCagaaatattaattttctttgATACTGTCTCTTaaactgtctttttcttttttcctttctcattttcttcttcctttgtTCCTTTCTGTTTTAACTCATTTATTATTCCTCCATCACTAagtgatatatattatattatattttcagaTTGTCCACCTGTGCGTCCAGCCGAGGACGCTCTTTAGATCAATAACTTCAaaatgagtggttgaatgttcgTGGGATTTACATGCAATTATGATTGTAACCAGCAGGTGAACTGATGAGATTTTGGtattgatccaaacaggatcaaggtcacagcaaggtcaaatgcgTGAAGTAGTTTTCTTCAGTCACTTCTTATCTGTTTGACTGTATCTGAATTCAGACACACAGACTAGacacaagaaggactagacttgttggcagtGGAGGCATCCACATTCTACTTGTTTCCCTTCATCTCTTTCTCActtcctttcattctttttttctttttgtctgtccctccttttctttctgcctttattacctttttcctttctctttcttttttctttctttgttcctttcattttacttcattttccattttcctctctctctctctctctctctctctctctctcccctcccttcACCTGGATTAGCTCGTCATtagaattaaactgaattgtaTAATGCTCAGTGTAGACGTGTGCATGTTTTAAATCTgcatcatgtttttgtttttgatgtaaATGATGTACATAAATGTGCTTTATCTGCTTAAATATGAAATGGTGGTACTTTAAATGAACAGTTCTGTGGTTTTATTATTGTGATGATTAGCTTCCTGCAGATGCTGAGGTTCAGTTGTGGAAGAAGCTGTATGATTCTGTATGATTTTtatataaagcattttattctcCTGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU212640 True 1237 lncRNA 0.34 1 11194437 11195673

Neighbor

gene id symbol gene type direction distance location
polr2h polr2h coding downstream 80848 11110545 ~ 11113589 (-)
mfsd8l1 LOC108271204 coding downstream 85872 11096127 ~ 11108565 (-)
hykk.2 hykk coding downstream 550243 10639021 ~ 10644194 (-)
nmur1a LOC108270657 coding downstream 559080 10623289 ~ 10635357 (-)
LOC113536600 NA coding downstream 597199 10594672 ~ 10597238 (-)
LOC113536755 acap2 coding upstream 366 11196039 ~ 11237809 (-)
psmd1 psmd1 coding upstream 232932 11428605 ~ 11475968 (-)
LOC113536618 LOC108271381 coding upstream 282935 11478608 ~ 11481509 (-)
LOC117598431 NA coding upstream 324446 11520119 ~ 11521620 (-)
sox2 sox2 coding upstream 547275 11742948 ~ 11745835 (-)
G179487 NA non-coding downstream 614977 10578420 ~ 10579460 (-)
G179485 NA non-coding downstream 618405 10574536 ~ 10576032 (-)
G179478 NA non-coding downstream 630985 10561403 ~ 10563452 (-)
G179469 NA non-coding downstream 679236 10514696 ~ 10515201 (-)
G179466 NA non-coding downstream 682413 10511621 ~ 10512024 (-)
G179827 ttc14 non-coding upstream 363246 11558919 ~ 11562343 (-)
G179972 NA non-coding upstream 532604 11728277 ~ 11777745 (-)
G180111 NA non-coding upstream 800497 11996170 ~ 11996383 (-)
G180127 NA non-coding upstream 857608 12053281 ~ 12054861 (-)
G180278 NA non-coding upstream 877596 12073269 ~ 12074531 (-)
LOC113536673 NA other downstream 499318 10605511 ~ 10695119 (-)
sh3gl3a sh3gl3a,LOC108271217,LOC108439633,LOC107709492,LOC107685195,LOC107591296 other downstream 670858 10486735 ~ 10523579 (-)
G179035 NA other downstream 1379212 9813892 ~ 9815225 (-)
G178942 NA other downstream 1671107 9522416 ~ 9523330 (-)
LOC113536412 NA other downstream 1787219 9387491 ~ 9407218 (-)
nppc anfc4 other upstream 48174 11243847 ~ 11246310 (-)
G179803 ncl other upstream 213419 11409092 ~ 11420046 (-)
LOC117598430 NA other upstream 296034 11491707 ~ 11503962 (-)
LOC113536577 NA other upstream 315173 11510846 ~ 11518394 (-)
LOC117598402 NA other upstream 332284 11527957 ~ 11532033 (-)

Expression


Co-expression Network