G179773


Basic Information

Item Value
gene id G179773
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 11471346 ~ 11473207 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU212705
CGATTCAAGGATAGTTTTCTCAAACACGTCCAGGCGTCTGGTCTCCAGCGCAATCCCAATGGCCTGCTTGTACTTGTGATCATCCAGGCATCTCtggaacattttattaacaATGCCCTCCAGACGAGGATCGATGGTCTTCTTCTCTTCGTCCTCTGGCAGCTCGGCATTCTCCACACGCAGCTTTGTGTAGTGATCAATACATTTCGctgtATGGTTTCCACATATTCAGAGTCATCAGTGACGTTGAAGAGATCTCCAGCGCCCAGAGCATAGTTCAGCGACTCCTCAAAAGCGCCGAGGTGGTAAAACACTTTAGAAGCCACCAACGCAGCAAACGCTCTGCTACGGAAAGTCTCATCTTCGTACAGGACCTCACTGAGAAACAAACAGCATGTTGTTCTCCCTCTCTAAAACAATCTAGTCTTTCAGTACATATGCTGCTTCGTTACACACTCCTGCCCTGTTGTTTGACCTTGTAGGTATTCAGTTAGAggcaaaaacacagcttttttccatccacagtgtgtgttaatcatccCCGAACCTTCATCAGGGTTGGCTTTTGTTTGGTGGACTGTTTCTCAATCTGTGCTCCCTTTTCATTGATGCACACGACAGAGGGGTGTCAATACTTTGTAACTGTACACATGTATGGTGGGTGAACTTGAGAAAATAACCAGTGAATATATAAAAGGATCTAAGGAATATCCTACTTACATTTTATCCACAGACTCTGAGATTTCAGCCCAGAAGTCATTGACGATGGAGTTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU212705 True 776 lncRNA 0.45 2 11471346 11473207

Neighbor

gene id symbol gene type direction distance location
htr2b htr2b coding upstream 13938 11446953 ~ 11457408 (+)
ncl ncl coding upstream 51529 11409068 ~ 11419817 (+)
LOC113536800 NA coding upstream 53103 11418114 ~ 11418243 (+)
LOC117598448 NA coding upstream 58706 11412574 ~ 11412640 (+)
LOC113536790 NA coding upstream 59219 11412060 ~ 11412127 (+)
ttc14 ttc14 coding downstream 78319 11551526 ~ 11562360 (+)
dnajc19 dnajc19,LOC107727073 coding downstream 382412 11855619 ~ 11861835 (+)
atp11b atp11b,si:dkey-211e20.10,LOC106613933,LOC107566880,LOC107747927 coding downstream 427189 11900396 ~ 11958703 (+)
kng1 NA coding downstream 512215 11985422 ~ 11992116 (+)
cers1 cers1,LOC107718480 coding downstream 523249 11996456 ~ 12019500 (+)
G179753 NA non-coding upstream 63932 11404359 ~ 11407414 (+)
G179754 NA non-coding upstream 69912 11400924 ~ 11401434 (+)
G179696 NA non-coding upstream 275659 11194836 ~ 11195687 (+)
G179685 NA non-coding upstream 307967 11163021 ~ 11163379 (+)
G179648 NA non-coding upstream 316583 11152149 ~ 11154763 (+)
G179775 NA non-coding downstream 361 11473568 ~ 11475147 (+)
G179779 NA non-coding downstream 5141 11478348 ~ 11530003 (+)
G179786 NA non-coding downstream 43540 11516747 ~ 11518939 (+)
G179787 NA non-coding downstream 48596 11521803 ~ 11524359 (+)
G179834 NA non-coding downstream 94151 11567358 ~ 11567567 (+)
G179758 psmd1 other upstream 40449 11428613 ~ 11430897 (+)
G179643 NA other upstream 309749 11160346 ~ 11161597 (+)
G179632 NA other upstream 372535 11096153 ~ 11098811 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other upstream 620423 10810670 ~ 10850923 (+)
LOC113536578 NA other upstream 3200596 8253421 ~ 8270750 (+)
G180121 NA other downstream 581751 12054958 ~ 12055749 (+)
timm13 timm13,LOC107731338,LOC106573564,LOC107593051 other downstream 854845 12328052 ~ 12333681 (+)
cdc14ab cdc14a other downstream 1039681 12512888 ~ 12561781 (+)
LOC117598398 NA other downstream 1099950 12573157 ~ 12602064 (+)
ankmy1 ankmy1 other downstream 1623166 13096373 ~ 13111706 (+)

Expression


Co-expression Network