G179803 (ncl)


Basic Information

Item Value
gene id G179803
gene name ncl
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 11409092 ~ 11420046 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU212748
AAGAATAACAGGATGCACAACTTTTACAAatcatttagtttatttaaaatttatcatTTTCAACATACGCAAGTAAAAAGTTTGTTGATGTAGTTAGATATAATCCAGACACTGATCTCTACAAACCATTGAGGCATTTTTGAACAAAGCaacttctgtctctctctccgtctctctctctcacacacacacacacacacgcaggcacAGATTTACGACAGTACACAACTTAACCAGATTTCAAAAAGCCCAAACACATTTTTGGGCATGTTTAATCGTTCATCTTTTATAATATGCTTTGTACAGTTTATGGTAAAACACGCACCTaaagcaaactaaaaaaaacagacaataaatCATTTAGGgatattttaacaaaaacagtaaaaataaaaaaaaaaaaaaaaaaaaaaaaaacaacattcattcacacttcaATTTTTCTCCCGCAAAATTGGGGAAAACATGAAGATGCGCACAGATGAAGAGGAACATTTGAGAATGCAGGAAgctttcagacagaaaaaagatGGACGCTCCATTAATTATTGAGATGCTGGAATGTCCCAAAGACCATTCGAGCAGAAACACAGTCCGTTTATttggaaatattaaaaaatagagAGTAGTTTTTAATCGTCAAATCTGATCTTCTTTCCTTGAGGTTTTGCTCCGGCTCCGCCACCTCGGCcacctgaaaaataaaatcacattaacttgagataattataaataaactgaaatatttattacaatggATCTAACAGAGACAAATCGTTATGAAAGACTTTACatattcatttcactgtgtgtaaagTGATGCATTTATTACCTCTGAATCCTCCCCTTCCTCCTCCACGGTGtccacctcctcctctccctccaaatcctcctcgtcctcctcctctgccGCCTCCGAaccctcctcgtcctcctcctcttcctccttctccttttgGCTTGGCATAGTCCAGAGTCACTTTGTTTCCATCAATCTCTGCATCGTCCATCGCTTCCTTCGCTGCTTTGCAGTCTTCCTCGCTGTCGAAGTCGACAAAACCGtacctgcaaaacacacaaccTTGGTTACGTCTCACCATCACTACACGTCAACTGCACTGTgctgttaccatcccaaagttaattattctcttgtaacagcacatccctaagagttttatttcttttataccacactTTCACAATGATTACAACAGTGCCATGTCatactttatccatttatagttagatttaatgttgtggaatgtcagtaAAACAATTTAggtcctgttctcacttactgcagctaaacagtcatttctcaccagcctctcttttttgtctctcttgaagttaatgagagaaaaaaaggagcttGTCTTGCTATCAGGAAATCAGAAAGTGTAAACTactgtcctgaaaatgttggaaaaacttaaatttacagctttacctctggctgttacaaagcactgacaccagaaatgttaaatatctccttacagaaaacttcaccatatcaaaaatgatttttttttatttattcatgcgGCATGTTCACCAtgcgagtccctgtgaatgagctgttactatataaatgataaatagaatgagtgcattaattataaacctgtgatttgcaagTCTGACcgatcagaatccagaatttacCAGCTCTATAGTATAAACTGAAGGGCAGTTTATGATGCCAGAGGTTCAGTTgtgttgaaacacacacaggttataAACAGTAAAGGTTGTTATACAGCTAGTTGTCTCACATCAGACATAAGCAACTCCCATCATAGAGGAGAGACTCGTATAAATGTGAGTGTCAATCTACTTCTCGTGCGAATCCATGCTCTGTCACCATCACACAGAGAGGAGCTCATGAGAAGATCATTTAACAGTTGAACTTGTGAAAGTTTGCAGGCTGCATCGTTTCAAAATAATATTGAACCCTGGCGTTGGAACTACAACTTGTTCCATttcaaactgaatttttttttttgtaaacgtGGAATAAAAACACCCCACACACCCTGGGGGTGCCATGCTCAACCATTCACTATCCTTCCTGCCCTGAGGCttgctctgattggttgagacAAATAATACTAAGAACTAAAGAACTATCTAGGAGGGCTGGGTGATGTATAATCCAGCGCCTCCTTGGCATCATCTGTGTTTTCAAACTCGACAAAGGCATACCCTTTCGGCCGGCCATTATTCTGTGGTATTCTGATAGCGACGGCTTTCTCAAACACGCTCTGCAGAGACTCCTCTGTGGCACTGAACGCTAGATTATTTACAACCAGAACCTTGTTTGCAGGTGCAGAAGCCGGTCCTTTGCCGCTCTGTCGGCTTTTGGCGCCTGTGAAGTCCACCATGATGGATCGGCCCTGAACATCTGAACCCTGCGTCTCCTCCAACATTTTCTCAGCGATTGCTTCCGTCTTGAATTCAATGTACGCAATTCCTCTGCTGGTGCCGTTGTGGCCGACGGGTATCCTGATATCCAGTGCTTGGTCAAAAATCTCCTTCAGCTCATCTGAGGTTATGGAGTATGGCAGATTTTTCACAAACAGAGTCCGGGCATCTCTCTCCTTTTTGCTTTCTTGAGAGTCCTCTTTACTTCTCGCTCGGTCCAGTTTGATCGGCTGACCCATAAACTTCTTCCCGTTGAGACCGAGGGCTTGCTGAAGCTCCTCTTCTGTGCCAAAGTCGACATAACCAAACTTCTTGGACCCTCCAAGACGGACATCCTGAATAACAAGGCCCTCTTTCTTGAAGAATTTGCCGATGCCTTCTTTAATTTCTTCAAAACTCTTATCTGAGTTCAGGTTACCCATAAACAAACTGACAACTTCTCCATCAGATTTGGCTTTTTTAGCCGGTGGTGTTTCTTTGTCCTTCTTTACGTCAGCCTTCCTCTTTCCTGGTGTTACAGGAGCAGCTTCCTCgtcctcttcatcatcctcttcatcgtcctcatcatcctcctcttcatcgtcctcatcctcctctcttCTTCAGATTCTTCCTTGGCCTTCTTCACTGCTGCTTTTTTGGCTGGTGCAGGTGTTGTGTccatttcctcttcctcctcttccgattcatcatcttcatcctcagaTTCCTCTTTAGCTGGAGCTGCTTTAGCAGCAGGTTTAGCAGGAGCTGCTTTTTTAGGAGGCGGAGCTTCCTCCTCTTCTGATTCATCATCATCatcgtcgtcgtcatcatcCTCATCAGACTCCTCCTTCTTTGCAGGAGCAGCTTTAGCCTTCACAGGTGTCGCTTTAGCAGGGGTGGCCTTGGCTGATTTAGCAGGGGTAGCCTTTTTGGGTGGTTCCTCCTCAGATTCttcatcatcgtcgtcatcctcatcatcctcgtCATCTGATTCTGCAGCAACAGCTGCTGCTTTCTTGGCAGGGGCTGCTTTAGCGGCTGGAGCTTTAGCCACTTTAGCTGGAGGAGCCTCTTCCTCTATTCGTCGTCGTCATCATCGTCTTCACTTTCTTGTTTGGCAGgagtttttccatttttcactgCCTTCGCTGGAGTTGCGTTCTTCTTGGCTGCAGCTTTGGGTGGTGGCGCCTCTTCTTCGTCATCTTCATCACTGTCCTCCTCACTGGACTCTTCGACTTCCTTTGGAGGTGGAGGAGCCTTTTTCTTCGGTGGTGCTTCCTTCACTTGTTTTTTCGACGCCTTCGCGAGTTTCACCATGGCTGGGCGGTGTTTCACTGAAACACGATAATAATGAGTTAAAACTAATCTTTTTTTACCGCAGCTCACTCACACGTGGTTCACTTCAGCAGCCTGGTGTGCACTCAGTTAGATAGTACAAGAGACGCTGCAGCACGGTGAAGCGCCT
>TU212749
cacaacacctCTCGCAGCCTTTAAACCTACTCATGTACAAACATGCTGGATGTTGTAAAATGGAAGGCCCTAGTTTTGTAATTTGTGAAAATCAGGGTCTCAGAACAGCCCAGGAAATAGCTTAAACTTTTCcaggttgccatggaaacatgTAGGACTAAAAGGTTTCAGCTCTGccctgccctctagtggacatCACTTTTCATCCTGATaggtttttaatccatttaaatgCATAAAGTTGAGTATGCAAACAGTGTGTGAACTGCTCGGACCTGATCTTTCCGTCATACTGTTTTACAATTGTCTGTGCACAAGTAACTACTTGTGGGAGTCTTGTccgaataaataaacaaaatatattaagaaaaaatgAGAATCATTTGTGTGTTAGGAGGTTAAACTCACCCGGTCCTTTGCCGCTCTGTCGGCTTTTGGCGCCTGTGAAGTCCACCATGATGGATCGGCCCTGAACATCTGAACCCTGCGTCTCCTCCAACATTTTCTCAGCGATTGCTTCCGTCTTGAATTCAATGTACGCAATTCCTCTGCTGGTGCCGTTGTGGCCGACGGGTATCCTGATATCCAGTGCTTGGTCAAAAATCTCCTTCAGCTCATCTGAGGTTATGGAGTATGGCAGATTTTTCACAAACAGAGTCCGGGCATCTCTCTCCTTTTTGCTTTCTTGAGAGTCCTCTTTACTTCTCGCTCGGTCCAGTTTGATCGGCTGACCCATAAACTTCTTCCCGTTGAGACCGAGGGCTTGCTGAAGCTCCTCTTCTGTGCCAAAGTCGACATAACCAAACTTCTTGGACCCTCCAAGACGGACATCCTGAATAACAAGGCCCTCTTTCTTGAAGAATTTGCCGATGCCTTCTTTAATTTCTTCAAAACTCTTATCTGAGTTCAGGTTACCCATAAACAAACTGACAACTTCTCCATCAGATTTGGCTTTTTTAGCCGGTGGTGTTTCTTTGTCCTTCTTTACGTCAGCCTTCCTCTTTCCTGGTGTTACAGGAGCAGCTTCCTCgtcctcttcatcatcctcttcatcgtcctcatcatcctcctcttcatcgtcctcatcctcctctcttCTTCAGATTCTTCCTTGGCCTTCTTCACTGCTGCTTTTTTGGCTGGTGCAGGTGTTGTGTccatttcctcttcctcctcttccgattcatcatcttcatcctcagaTTCCTCTTTAGCTGGAGCTGCTTTAGCAGCAGGTTTAGCAGGAGCTGCTTTTTTAGGAGGCGGAGCTTCCTCCTCTTCTGATTCATCATCatcgtcgtcgtcatcatcCTCATCAGACTCCTCCTTCTTTGCAGGAGCAGCTTTAGCCTTCACAGGTGTCGCTTTAGCAGGGGTGGCCTTGGCTGATTTAGCAGGGGTAGCCTTTTTGGGTGGTTCCTCCTCAGATTCttcatcatcgtcgtcatcctcatcatcctcgtCATCTGATTCTGCAGCAACAGCTGCTGCTTTCTTGGCAGGGGCTGCTTTAGCGGCTGGAGCTTTAGCCACTTTAGCTGGAGGAGCCTCTTCCTCAGATTCGTCGTCGTCATCATCGTCTTCACTTTCTTGTTTGGCAGgagtttttccatttttcactgCCTTCGCTGGAGTTGCGTTCTTCTTGGCTGCAGCTTTGGGTGGTGGCGCCTCTTCTTCGTCATCTTCATCACTGTCCTCCTCACTGGACTCTTCGACTTCCTTTGGAGGTGGAGGAGCCTTTTTCTTCGGTGGTGCTTCCTTCACTTGTTTTTTCGACGCCTTCGCGAGTTTCACCATGGCTGGGCGGTGTTTCACTGAAACACGATAATAATGAGTTAAAACTAATCTTTTTTTACCGCAGCTCACTCACACGTGGTTCACTTCAGCAGCCTGGTGTGCACTCAGTTAGATAGTACAAGAGACGCTGCAGCACGGTGAAGCGCCT

Function

symbol description
ncl Predicted to enable mRNA binding activity. Acts upstream of or within heart looping; rRNA processing; and rRNA transcription. Predicted to be located in nucleolus. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasm and nucleus. Is expressed in cardiac ventricle. Orthologous to human NCL (nucleolin).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU212748 True 3883 lncRNA 0.43 16 11409092 11420046
TU212749 False 1948 TUCP 0.47 12 11409092 11415440

Neighbor

gene id symbol gene type direction distance location
LOC113536755 acap2 coding downstream 171283 11196039 ~ 11237809 (-)
polr2h polr2h coding downstream 295503 11110545 ~ 11113589 (-)
mfsd8l1 LOC108271204 coding downstream 300527 11096127 ~ 11108565 (-)
hykk.2 hykk coding downstream 764898 10639021 ~ 10644194 (-)
nmur1a LOC108270657 coding downstream 773735 10623289 ~ 10635357 (-)
psmd1 psmd1 coding upstream 8559 11428605 ~ 11475968 (-)
LOC113536618 LOC108271381 coding upstream 58562 11478608 ~ 11481509 (-)
LOC117598431 NA coding upstream 100073 11520119 ~ 11521620 (-)
sox2 sox2 coding upstream 322902 11742948 ~ 11745835 (-)
mccc1 mccc1,LOC106613934 coding upstream 538232 11958278 ~ 11973216 (-)
G179727 NA non-coding downstream 213419 11194437 ~ 11195673 (-)
G179487 NA non-coding downstream 829632 10578420 ~ 10579460 (-)
G179485 NA non-coding downstream 833060 10574536 ~ 10576032 (-)
G179478 NA non-coding downstream 845640 10561403 ~ 10563452 (-)
G179469 NA non-coding downstream 893891 10514696 ~ 10515201 (-)
G179827 ttc14 non-coding upstream 138873 11558919 ~ 11562343 (-)
G179972 NA non-coding upstream 308231 11728277 ~ 11777745 (-)
G180111 NA non-coding upstream 576124 11996170 ~ 11996383 (-)
G180127 NA non-coding upstream 633235 12053281 ~ 12054861 (-)
G180278 NA non-coding upstream 653223 12073269 ~ 12074531 (-)
nppc anfc4 other downstream 162782 11243847 ~ 11246310 (-)
LOC113536673 NA other downstream 713973 10605511 ~ 10695119 (-)
sh3gl3a sh3gl3a,LOC108271217,LOC108439633,LOC107709492,LOC107685195,LOC107591296 other downstream 885513 10486735 ~ 10523579 (-)
G179035 NA other downstream 1593867 9813892 ~ 9815225 (-)
G178942 NA other downstream 1885762 9522416 ~ 9523330 (-)
LOC117598430 NA other upstream 71661 11491707 ~ 11503962 (-)
LOC113536577 NA other upstream 90800 11510846 ~ 11518394 (-)
LOC117598402 NA other upstream 107911 11527957 ~ 11532033 (-)
fxr1 fxr1 other upstream 442943 11862989 ~ 11889149 (-)
ncln ncln other upstream 600366 12020412 ~ 12032006 (-)

Expression


Co-expression Network