LOC117598430


Basic Information

Item Value
gene id LOC117598430
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 11491707 ~ 11503962 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU212758
GCCTCAGAGTTTATTCAGATTTAGAGCAGCATACAATACACTTCCCTCAATTTTTAAGCTGTTTAAGGATTGCCATGCCGAGAGCTGCTTTTACATCACTGTATGCCAAGATGCTACTCACACTACTTACAGGATGTGTTATAATGATTAAAGgacaaacagcaacaacagATCCAACATCTACACTTCCAGCTGCTACACAAACCACCTATCCAACAACAACGGCCatcacaaccacctctccaacaacagCCATCACAACTgactctccaacaacaacagacatcacaaccacctctccaacaacaacaacagacatCACAACTGACTCTCCAACGACAACAGCCATTACATCAACctcttcaacaacaacaaccatcacaaccacctctccaacaacagacatcacaaccacctctccaaTAACAACACCTGTTACAACCGACTCTCCAACGACAACAGCCATTACATCAACctcttcaacaacaacaaccatcacaaccacctctccaacaacagatatcacaaccacctctccaaTAACAACAGCTAttacaaccacctctccaacatCAACAGCCAttacaaccacctctccaacaacaacagatATCACAACTgactctccaacaacaacaaccattacaaccacctctccaacaacaacagccaTTACAACCAACTCTCCAACAacactgaccatcacaaccCACTCTCCTACGACAACAGCCATTACATCAACCTCTTCAACAACAACAGACCTCACAACCACcactccaacaacaacaaccatcacaaccacctctccaacaacagaCATCACAAC
>XM_034308894.1
CTTCCCTCAATTTTTAAGCTGTTTAAGGATTGCCATGCCGAGAGCTGCTTTTACATCACTGTATGCCAAGATGCTACTCACACTACTTACAGGATGTGTTATAATGATTAAAGgacaaacagcaacaacagATCCAACATCTACACTTCCAGCTGCTACACAAACCACCTATCCAACAACAACGGCCatcacaaccacctctccaacaacagCCATCACAACTgactctccaacaacaacagacatcacaaccacctctccaacaacaacaacagacatCACAACTGACTCTCCAACGACAACAGCCATTACATCAACctcttcaacaacaacaaccatcacaaccacctctccaacaacagacatcacaaccacctctccaaTAACAACACCTGTTACAACCGACTCTCCAACGACAACAGCCATTACATCAACctcttcaacaacaacaaccatcacaaccacctctccaacaacagatatcacaaccacctctccaaTAACAACAGCTAttacaaccacctctccaacatCAACAGCCAttacaaccacctctccaacaacaacagatATCACAACTgactctccaacaacaacaaccattaCAAgcacctctccaacaacaacatctccaacaacagatatcacaaccacctctccaacaacaacaaccattaCAAGCACTTCCCCAACAACAACTATCACAACGACATCTCCAACTACAACCAACACAACCATCTCTCCAACGACAACAGATATCACAACCACCACTccaccaacaacaaccaccacaaccGCCTCTCCAACAACAGACatcacaaccacctctccaacaacaacagacaTCACAACCGACTCTCCAACGACAACAGCCATTACATCAACctcttcaacaacaacaaccatcacaaccacctctccaacaacagatatcacaaccacctctccaacaacaacaaccattaCAAGCACTTCCCCAACAACAACTATCACAACGACATCTCCAACTACAACCAACACAACCATCTCTCCAACGACAACAGATATCACAACCACCACTccaccaacaacaaccaccacaaccGCCTCTCCAACAACAGACatcacaaccacctctccaacaacaacagacatcacaaccaactctccaacaacaacagccaTTACATCAAActcttcaacaacaacaaccatcatcacaaccacctctccaacaacagatatcacaaccacctctccaacaacaacaaccattaCAAgcacctctccaacaacaacagccaTTACAACCAACTCTCCAACAacactgaccatcacaaccCACTCTCCTACGACAACAGCCATTACAGCAACCTCTTCAACAACAACAGACCTCACAACCACCACTCCAACAACAACGGCCatcacaaccacctctccaacgACAACAGCCATTACATCAACCTCTTCAACTACAACAGCCATCccaaccacctctccaacaacaacagacctcacaaccacctctccaataacaacagacatcacaaccacctctccaacaacagCCATTACAACCACCTCTCCCATAACAACAACCATCACAACCACttctccaacaacaacagccaTTACAACCACCTCTCCTACAAAAGACATCACAACCaactctccaacaacaacaattacaagcacctctccaacaacaacagccatcacaaccacctctccaacaacactgaccatcacaaccCACTCTCCTACGACAACAGCCATTACATCAATGTCTTCAACAACAACAGACCTCACAACCACcactccaacaacaacaaccatcaCAACCACCTCTGCAACAACAGACATCACGACAGCCTCACCAATAACAACAGCTAttacaaccacctctccaacgTCGACAGCCAttacaaccacctCAACCATCCCAACTACAACCAAcacaaccacctctccaacaacaacaactgccTCCCCAACAACCACCATCACAACCATTTATCCAACTACAACCAACACAACCATATCTCCAACGACAACCGACCtcacaaccacctctccaacaacaaccattacaaccacctctccaatgacaacagacatcacaaccacctctccaacaacagacatcacaaccacctctccaacaacaacagatctcacaaccacctctccaacaacatCAGCCATTACAACCACCTCTTCCATAACAACAACCATCACAACCACTTCTCCAGCAACAACAGCCAttacaaccacctctccaacaactacaaccattacaaccacctctccaacaacagaCATCACAACAATCTCTCCAACAACACCAGCCAttacaaccacctctcca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU212758 False 826 TUCP 0.44 3 11496074 11503962
XM_034308894.1 True 2347 mRNA 0.46 4 11491707 11503922

Neighbor

gene id symbol gene type direction distance location
LOC113536618 LOC108271381 coding downstream 10198 11478608 ~ 11481509 (-)
psmd1 psmd1 coding downstream 15739 11428605 ~ 11475968 (-)
LOC113536755 acap2 coding downstream 253898 11196039 ~ 11237809 (-)
polr2h polr2h coding downstream 378118 11110545 ~ 11113589 (-)
mfsd8l1 LOC108271204 coding downstream 383142 11096127 ~ 11108565 (-)
LOC117598431 NA coding upstream 16157 11520119 ~ 11521620 (-)
sox2 sox2 coding upstream 238986 11742948 ~ 11745835 (-)
mccc1 mccc1,LOC106613934 coding upstream 454316 11958278 ~ 11973216 (-)
LOC113536502 NA coding upstream 469719 11973681 ~ 11980660 (-)
s1pr4 LOC108270882 coding upstream 559033 12062995 ~ 12065799 (-)
G179727 NA non-coding downstream 296034 11194437 ~ 11195673 (-)
G179487 NA non-coding downstream 912247 10578420 ~ 10579460 (-)
G179485 NA non-coding downstream 915675 10574536 ~ 10576032 (-)
G179478 NA non-coding downstream 928255 10561403 ~ 10563452 (-)
G179469 NA non-coding downstream 976506 10514696 ~ 10515201 (-)
G179827 ttc14 non-coding upstream 54957 11558919 ~ 11562343 (-)
G179972 NA non-coding upstream 224315 11728277 ~ 11777745 (-)
G180111 NA non-coding upstream 492208 11996170 ~ 11996383 (-)
G180127 NA non-coding upstream 549319 12053281 ~ 12054861 (-)
G180278 NA non-coding upstream 569307 12073269 ~ 12074531 (-)
G179803 ncl other downstream 71661 11409092 ~ 11420046 (-)
nppc anfc4 other downstream 245397 11243847 ~ 11246310 (-)
LOC113536673 NA other downstream 796588 10605511 ~ 10695119 (-)
sh3gl3a sh3gl3a,LOC108271217,LOC108439633,LOC107709492,LOC107685195,LOC107591296 other downstream 968128 10486735 ~ 10523579 (-)
G179035 NA other downstream 1676482 9813892 ~ 9815225 (-)
LOC113536577 NA other upstream 6884 11510846 ~ 11518394 (-)
LOC117598402 NA other upstream 23995 11527957 ~ 11532033 (-)
fxr1 fxr1 other upstream 359027 11862989 ~ 11889149 (-)
ncln ncln other upstream 516450 12020412 ~ 12032006 (-)
G180485 s1pr1,LOC107715096,LOC107592715 other upstream 1213399 12717361 ~ 12720476 (-)

Expression


Co-expression Network