LOC113536577


Basic Information

Item Value
gene id LOC113536577
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 11510846 ~ 11518394 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU212763
acaaccacctctccaaAAACAATTACACCTCTTTCCATAACCGTCAcaagtgaaaaaacaaatacCACTTCTTCAACAACTATCACAACCACCTCTGCAAAAACAACTACAGCTCCTTCAACAACAACCAGCAAATTACCCATTCCAGAAACAGCTACAACCCCTTCAAAAACCACCAACAAAAACAGCTCTCCACAAACAATTCAACCACCAATAGCTCCACCATCAACAAATTCTACAGCATTTGCTCAAGCAGTGGTTAGGATGCTATCTGTCACTGAACTAAGCAATGATAAAATCATTAACTACATAGAGGAGTTTTCCAGGCTCATTCAGGCTAATGGAAACATTAAGATTACAGTGAAGAAGAGTCAAAAAGTGACACCTTAAAGATCGTCTGTGGCGAGCAAGTATTGATCAATTCTCAAAAAAACTGATTAAAGCAGGAAGCAGGTATCTGCATGATTCttcatttcagtgattttataCCAAAATCAAATGATGTATAGTATCATGAGTGTACTACTGAGCATAGCACTGCTATATGTCACTATATCAGTGCAAAGGCACCAGTATTATCAGCTCGGGATGACAATTGATTCAttatgtttcatttcactgacaTTTCTTGTGAGCatagttgtgttttattttgctaCCCTTCATCAGGACAGTCATAGTTTGCATTAAGAGATGTGCTGACTATGCTAGTAATTAAAGAAGTGATTATTTTGGGGATGAGAAAAtactaattaaaaatacaaattatttagtaaataaaCATAGAAAACTCTATCACCCTTCCAAGAAGCACCATCACAACCACACAGACTGTTAACATGCTActgtactaataataattaaattctaGCTGTGTCACACATAGTAGACAACTATGCAATGTTGTCATAATCTAAGATAACTGTGATTTTCAGTGCAAAAAATTACTGATTTTCAGGTACAACAAAAATGTGTTGGTATCATGGTTTCTAGAACG
>XM_034308573.1
TCTCCCCAGAATTATCTACAGACCAGACATCAGCATCTGAAGTTTTATCAGCATCTGTAACTCCAGAAACTTTATCAACACCATGGGTTACACCATCACCCTATACTTCACCAGAATCCTCTACAGATCACTCAACATCTGACTCTCCAGAAACATCAACAGAAATGATTACAGGATCACCATATACTTCCCCAGAATCATCTTTAGGAACACAAACAGTTACAGCATCACCATCTATTTTCCCTGAAACATCAACAGATCACTCATCAACAGCTACATCTCCAGAAAAGTCTTCAATACCATTCATTGCAGTATCCCTGTCTACTTCACCAGAATCTTCTACAGATCACTCATCAACATCTAAATATCCAGAAATTTTATCCACATCTAAATCTCCAGGAATTTTATCAACACCTTCGGTTCCAGCTTCTATTGTTTCAGAATCTTCTACAGATTTGCCCTTGACATCTTCAGCAATAAAACTGACAACCACTGCAGATTATCAGTCAACACCAAGAGCTCCCTCTTCATCATATACAACACAAGAATCAATTTCAACATTTATAAGTCTATCATTTCCATCTATACTTCCACCTACTGCACAAACACCATCTACAACTGAAATATCACCTCCTACTTTATCAGATCTGCCCTCAACATTTGCATCACTACAATCAACAGCTAAAATTTCACCTGCTCCAGATTCACCATCTACAGCTCCAACTATAGCTGTAACAACCATATCTCCAACTACCTCTTTTCTATCAACACCTACACTTCAGTTTGCTCCAACCACATCTTCAACAACTCCTTCAACAACCAATTTTTCACCAACAACTACTATTCCATCAATAATTACACTACCAACCACCCCTCCAAGAACAACTAGTAAAAATACCCAATCAACCACAATAACCACCCATCCAATCACAATTGCCTCTATAACTCCCACAATCACAATGTCGTCTCCAACCAACATAAATACTTCTCCAGCAACAAACACCACTACTCCTCCTCTATTAACACTGACACCAACTATAACCCTCTCTCACCTAACAACAGCTACCTCTCCAATACCATCCACCATAGCATATACTCCAAACACAACCACAGTAATTGACACAAGTCCTTCAACAACCACATCTTCAGCAATAAGCACCACAGCTTCTTCTTTTCTATCAATTCCATCAGCCCAATCCATGACCAGTACTTCTGCAACTCCTTCAACAAATGTTCCCAACACCACTAACACCCGTCCAACAGCAACTACAATACCAATAATGAACACAACTAACACACTAATCTCCACACCTCCTGCAACTACCACTACAAAAACCAACACAAGCACATTTCCCTCAAGCTCCCCCACAATATCTTCTCTATTTGTAACATCTATAGCCCAACTCTCAACATCCGCAGCTCCAGCAACTATGGCCACCACAAATACTGGTCTGACAACAACTACAACTATCACATCCATCTCTTCAACAACAGCTATGTCTCTAAAAACACCCACAACTCTTCCAATTACAGCAAACCCCACTGCAACCACTAGTCCAACAATGCCCATAAACCTAATAACCACATCTCAAAAAACATCCACAACTCCTTCTACAACAACAAAGAGCACAACCATTTCTTCTACAACCACCTTTCCAACACCAGCAACTCCTCCAAATACTACAGCCACTATCACAACCACTGGTCCAACAACTATGACTatcacaaccacctctccaacaacagCTATCTCTCCAACAACACCCACACCTCCTCCAAATACAACAACTACCACAACCACTAGTTCAGCAATGCCAGCTCCAACAACAACCATCAAAACTATTTCTCTAACAACCTCTGCAACAACACCAACAAGTCATCCAAATACATCTGCTACCATCACAACCACTGGTCTGACAACAACTACATCTATCTCAACCATCTCTCCAACGACAGCTACCTCTCCAACAACACCCACAACTCCACCAAATACAACAACCACCATCACAACAGTGCCCATAAACCTAATAACCACCAGtccaacaactacaactacagCAGCAACCAGTTCAATCATATCTCAAGCAGCCACCTCTGCAAAAACAACTCCTCCAAATATAACTACCACCACAACTAGTCCTACAATGTTAATAAACATAACCACCTTTCCAAAAACACTTACAACTCCTTCAACAATGACCAGCACAGCCACCAACTCtgcaacaacaccaacaacccTTCCAAATACAACAACCACAACCAGTGGaccagcaacaacaacaaccatcaCAAGCATCTCTCCAAGAACAACAGCTACCACTCCAACAAATACCATGCCTTCAACATCAATGatcacaaccacctctccaaAAACAATTACACCTCTTTCCATAACCGTCAcaagtgaaaaaacaaatacCACTTCTTCAACAACTATCACAACCACCTCTGCAAAAACAACTACAGCTCCTTCAACAACAACCAGCAAATTACCCATTCCAGAAACAGCTACAACCCCTTCAAAAACCACCAACAAAAACAGCTCTCCACAAACAATTCAACCACCAATAGCTCCACCATCAACAAATTCTACAGCATTTGCTCAAGCAGTGGTTAGGATGCTATCTGTCACTGAACTAAGCAATGATAAAATCATTAACTACATAGAGGAGTTTTCCAGGCTCATTCAGGCTAATGGAAACATTAAGATTACAGTGAAGAAGAGTCAAAAAGTGACACCTTAAAGATCGTCTGTGGCGAGCAAGTATTGATCAATTCTCAAAAAAACTGATTAAAGCAGGAAGCAGGTATCTGCATGATTCttcatttcagtgattttataCCAAAATCAAATGATGTATAGTATCATGAGTGTACTACTGAGCATAGCACTGCTATATGTCACTATATCAGTGCAAAGGCACCAGTATTATCAGCTCGGGATGACAATTGATTCAttatgtttcatttcactgacaTTTCTTGTGAGCatagttgtgttttattttgctaCCCTTCATCAGGACAGTCATAGTTTGCATTAAGAGATGTGCTGACTATGCTAGTAATTAAAGAAGTGATTATTTTGGGGATGAGAAAAtactaattaaaaatacaaattatttagtaaataaaCATAGAAAACTCTATCACCCTTCCAAGAAGCACCATCACAACCACACAGACTGTTAACATGCTActgtactaataataattaaattctaGCTGTGTCACACATAGTAGACAACTATGCAATGTTGTCATAATCTAAGATAACTGTGATTTTCAGTGCAAAAAATTACTGATTTTCAGGTACAACAAAAATGTGTTGGTATCATGGTTTCTAGAACGTTTATCAAACAAGGACTATTAAAAAAGGATATACAGTATGGTGGTATTCTTGGCTACTATTTATGTActttttaactataaaatattgtattggattttttttcagttggtGTAGTCTGGTGGCAAAGGGATATACATATTGTAGCACAAAAgatagaaattattatttttgtaatatttaagtCCACCATGGTGTTTTGGTGTCTGTGTTATCAAACAATCCACtttagctaataaataaaaaaatgaaata

Function

GO:

id name namespace
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU212763 False 997 lncRNA 0.36 3 11511099 11513673
XM_034308573.1 True 3604 mRNA 0.39 4 11510846 11518394

Neighbor

gene id symbol gene type direction distance location
LOC113536618 LOC108271381 coding downstream 29337 11478608 ~ 11481509 (-)
psmd1 psmd1 coding downstream 34878 11428605 ~ 11475968 (-)
LOC113536755 acap2 coding downstream 273037 11196039 ~ 11237809 (-)
polr2h polr2h coding downstream 397257 11110545 ~ 11113589 (-)
mfsd8l1 LOC108271204 coding downstream 402281 11096127 ~ 11108565 (-)
LOC117598431 NA coding upstream 1725 11520119 ~ 11521620 (-)
sox2 sox2 coding upstream 224554 11742948 ~ 11745835 (-)
mccc1 mccc1,LOC106613934 coding upstream 439884 11958278 ~ 11973216 (-)
LOC113536502 NA coding upstream 455287 11973681 ~ 11980660 (-)
s1pr4 LOC108270882 coding upstream 544601 12062995 ~ 12065799 (-)
G179727 NA non-coding downstream 315173 11194437 ~ 11195673 (-)
G179487 NA non-coding downstream 931386 10578420 ~ 10579460 (-)
G179485 NA non-coding downstream 934814 10574536 ~ 10576032 (-)
G179478 NA non-coding downstream 947394 10561403 ~ 10563452 (-)
G179469 NA non-coding downstream 995645 10514696 ~ 10515201 (-)
G179827 ttc14 non-coding upstream 40525 11558919 ~ 11562343 (-)
G179972 NA non-coding upstream 209883 11728277 ~ 11777745 (-)
G180111 NA non-coding upstream 477776 11996170 ~ 11996383 (-)
G180127 NA non-coding upstream 534887 12053281 ~ 12054861 (-)
G180278 NA non-coding upstream 554875 12073269 ~ 12074531 (-)
LOC117598430 NA other downstream 6884 11491707 ~ 11503962 (-)
G179803 ncl other downstream 90800 11409092 ~ 11420046 (-)
nppc anfc4 other downstream 264536 11243847 ~ 11246310 (-)
LOC113536673 NA other downstream 815727 10605511 ~ 10695119 (-)
sh3gl3a sh3gl3a,LOC108271217,LOC108439633,LOC107709492,LOC107685195,LOC107591296 other downstream 987267 10486735 ~ 10523579 (-)
LOC117598402 NA other upstream 9563 11527957 ~ 11532033 (-)
fxr1 fxr1 other upstream 344595 11862989 ~ 11889149 (-)
ncln ncln other upstream 502018 12020412 ~ 12032006 (-)
G180485 s1pr1,LOC107715096,LOC107592715 other upstream 1198967 12717361 ~ 12720476 (-)
rc3h1a rc3h1,LOC108429496 other upstream 1233684 12752078 ~ 12782535 (-)

Expression


Co-expression Network